BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0860.1
(520 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 166 1e-44
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 108 7e-25
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 105 8e-25
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 80 3e-16
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 79 8e-16
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 166 bits (419), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 262/552 (47%), Gaps = 64/552 (11%)
Query: 1 MQCFAIPKGISNRIETIQRSFWW---GKAKSIHTINWAAICRPRKLGGLGLRNPILDNEA 57
M CF +PK + +I ++ FWW +AK +H W + + GG+G ++ N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLCKLGWRLLKFLDAPWAQLLKAKYFPKSAKPPSPKQNH-SRVWKSL---AEPIRKTSNL 113
L K WR+L ++ A++ K++YF KS +P + S VWKS+ E +R+ +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 114 IFWDVNIGTKISIWDDFWIPNHK----------PPIPNLNNCPFNTVNQLI--SNNYWNE 161
+ V G I IW W+ + PP + V+ LI S W +
Sbjct: 128 V---VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 162 ELLQIYFNEEICRAILSINLHPSAE---DAMVWTLTNSGNFTIKSMYRYLSNG-NRDSDT 217
+++++ F E+ R ++ L P D+ W T+SG++T+KS Y L+ N+ S
Sbjct: 185 DVIEMLF-PEVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSP 242
Query: 218 IE---------WSFIWNIRTIPRIKLFLWKCCTNSLPVKEKIG-KYIGNSYRCAFCEE-R 266
E + IW +T P+I+ FLWKC +NSLPV + +++ C C +
Sbjct: 243 QEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK 302
Query: 267 ETLSHVLLNCNFARAIWFHYNIR-------TDGIVSVRDWIMFWSSLD---DTTMALLAK 316
ET++H+L C FAR W +I D I W+ + + + L+
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPW 362
Query: 317 IMWFIWKARCDQCFGKKDIVPMQIIRNIQCYTTSFHDDRSPKSEIIPP--------KWLP 368
++W +WK R + F ++ +++R + + +S P +W P
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRP 422
Query: 369 PPHSFLKINVDASFSKFTDPAGIGCIIHDENGD--FIIAKAEPIRGQTAEECECLAILIA 426
PPH ++K N DA++++ + GIG ++ +E G+ ++ A+A P + ++ E E A+ A
Sbjct: 423 PPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALP-KLKSVLEAELEAMRWA 481
Query: 427 VQWAEELKISHLIIESDNSNLINHIQDKKKDISWQSLH-HMEQIRARRTNFEQIQFQYGS 485
V + +++I ESD+ LI + + D W SL ++ ++ + F +++F +
Sbjct: 482 VLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTEVKFVFIP 538
Query: 486 RKINILADTLAK 497
R+ N LA+ +A+
Sbjct: 539 REGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 108 bits (269), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 195/468 (41%), Gaps = 58/468 (12%)
Query: 78 LKAKYFPK-SAKPPSPKQNHSRVWKSLAEPIRKTSNLIFWDVNIGTKISIWDDFWIPNHK 136
+KA+YF S ++ S W SL + I + G I I D + +H
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 137 P-PIPNLNNCPFNTVNQLI----SNNYWNEELLQIYFNEEICRAILSINLHPSAE-DAMV 190
P P+ T+N L S +W++ + + ++ I I L S + D ++
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 191 WTLTNSGNFTIKSMYRYLSNG--------NRDSDTIEW-SFIWNIRTIPRIKLFLWKCCT 241
W +G +T++S Y L++ N +I+ + IWN+ +P++K FLW+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 242 NSLPVKEKI---GKYIGNSYRCAFCE-ERETLSHVLLNCNFARAIWFHYNIRTDGIVSVR 297
+L E++ G I S C C E E+++H L C FA W R +R
Sbjct: 181 QALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMAW-----RLSDSSLIR 233
Query: 298 DWIM----------FWSSLDDTTMALLAKIM-----WFIWKARCDQCFGKKDIVPMQIIR 342
+ +M + + DTTM+ K++ W IWKAR + F K P + +
Sbjct: 234 NQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVL 293
Query: 343 NIQC-------YTTSFHDDRSPKSEIIPPK--WLPPPHSFLKINVDASFSKFTDPAGIGC 393
+ + T S SP +I K W PP +++K N DA F A G
Sbjct: 294 SAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGW 353
Query: 394 IIHDENGDFII-AKAEPIRGQTAEECECLAILIAVQWAEELKISHLIIESDNSNLINHIQ 452
II + G I + E E A+L A+Q + + +E D LIN I
Sbjct: 354 IIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLIN 413
Query: 453 DKKKDISWQS--LHHMEQIRARRTNFEQIQFQYGSRKINILADTLAKW 498
IS+ S +H+E I F IQF + RK N LA LAK+
Sbjct: 414 ----GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKY 457
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 105 bits (263), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 144/302 (47%), Gaps = 30/302 (9%)
Query: 223 IWNIRTIPRIKLFLWKCCTNSLPVKEKIGK-YIGNSYRCAFC-EERETLSHVLLNCNFAR 280
IW ++T P+IK FLWK + +L + + + +I N +C C +E ET H+ +C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 281 AIWF-----HYNIRTDGI-VSVRDWIMFWSSLDDTTMALLAK---IMWFIWKARCDQCFG 331
+W H +RT GI + + ++ S L + L I+W +WK+R F
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 332 KKDIV---PMQIIRN-----------IQCYTTSFHDDRSPKSEIIPPKWLPPPHSFLKIN 377
+K I +Q RN +Q H R + + KW PP +++K N
Sbjct: 138 QKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN 197
Query: 378 VDASFSKFTDPAGIGCIIHDENGDFIIAKAEPIRGQTAE--ECECLAILIAVQWAEELKI 435
D +F+ T A G ++ DENG + + + I T++ E E A++IA+Q A
Sbjct: 198 YDGAFNHQTRNAKAGWLMRDENGVY-MGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGY 256
Query: 436 SHLIIESDNSNLINHIQDKKKDISWQSLHHMEQIRARRTNFEQIQFQYGSRKINILADTL 495
+I E D+ + + ++K +++ + + + R + FE+ F++ R N AD L
Sbjct: 257 RKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADIL 314
Query: 496 AK 497
AK
Sbjct: 315 AK 316
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 32/271 (11%)
Query: 252 KYIGNSYRCAFC-EERETLSHVLLNCNFARAIW-------FHYNIRTDGIVSVRDWIMFW 303
+++ C C + RET++H+L C FAR +W + TD + + ++W
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYAN----LYW 59
Query: 304 SSLDDTTMALLAKI-------MWFIWKARCDQCFGKKDIVPMQIIRNIQCYTTSFHDDRS 356
+ + L KI +W +WK+R + F K+ +++R + R
Sbjct: 60 VLNLEVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRE 119
Query: 357 PKSEIIPPK--------WLPPPHSFLKINVDASFSKFTDPAGIGCIIHDENGDFIIAKAE 408
+ + P+ W PP+ ++K N DA++ GIG I+ +E+G + A
Sbjct: 120 LEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGAR 179
Query: 409 PI-RGQTAEECECLAILIAVQWAEELKISHLIIESDNSNLINHIQDKKKDISWQSLH-HM 466
+ R + E E A+ AV +I ESD L+N + D W +L +
Sbjct: 180 ALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNS---DDFWPTLQPAL 236
Query: 467 EQIRARRTNFEQIQFQYGSRKINILADTLAK 497
E I+ +FE+++F++ R N +AD +A+
Sbjct: 237 EDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 37/295 (12%)
Query: 229 IPRIKLFLWKCCTNSLPVKEK-IGKYIGNSYRCAFCEERETLSHVLLNCNFARAIW---- 283
+P+IKLFLWK +LPV + + ++I +++ CA C ET +H+L +C+FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 284 ---FHYNIRTDGI--VSVRDWIMFWSSLDDTTMALLAKIMWFIWKARCDQCFGKKDIVPM 338
H I T + +++ + + T L I W IWKAR F
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---- 116
Query: 339 QIIRNIQCYTTSFHDDRS--------PKSEIIPPK---WLPPPHSFLKINVDASFSKFTD 387
I+ T + D + PK + P+ H FL VDA++ + +
Sbjct: 117 --FSVIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFL-CYVDAAWQQQSS 173
Query: 388 PAGIGCII----HDENGDFIIAKAEPIRGQTAEECECLAILIAVQWAEELKISHLIIESD 443
AG G + H E + A R + E AI A+ A +L+ S L++ SD
Sbjct: 174 LAGSGWVFQATSHSEK-EITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSD 232
Query: 444 NSNLINHIQDKKKDISWQSLHH-MEQIRARRTNFEQIQFQYGSRKINILADTLAK 497
+ ++++ + ++S + + +IR+ R F I FQ+ R +N +AD AK
Sbjct: 233 SKSIVDALNS---NVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284