BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0870.1
(293 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 80 2e-16
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 57 5e-09
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 52 3e-07
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 50 1e-06
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 50 1e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 88/344 (25%)
Query: 31 DTAKWTLTKSGNFTIKSMYNYL-------------RTGSSGPMHDQNDWFFIWNMNTIPR 77
D+ W T SG++T+KS Y L S P++ + IW T P+
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQK-----IWKSQTSPK 265
Query: 78 IKLFLWKCCTNSLPVKEKIG-KYIGNSYSCINCME-NETLDHVM---------------- 119
I+ FLWKC +NSLPV + +++ +CI C ET++H++
Sbjct: 266 IQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIP 325
Query: 120 --LHCNYARAIWFTFQMVARINN--------TSTTPLNLESIITNK-------------- 155
L +A +I+ V + N + P L + N+
Sbjct: 326 IPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQE 385
Query: 156 --------------------CRGKPKQHK-----WSPPSTPYPKINVDASFTTLSEQAVI 190
C KP+ ++ W PP + K N DA++ +E+ I
Sbjct: 386 VLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGI 445
Query: 191 GCITHDAEANFIITAADSV-RGQNAEECENLAIHYSLLRAIELRIQYVHIGSDNQNLIQY 249
G + + + A ++ + ++ E E A+ +++L + YV SD+Q LI+
Sbjct: 446 GWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEI 505
Query: 250 INGKSDGLHWQSKKVIEQTIALKAQFTDIVFSYAPRECNVKAKH 293
+N +D + K I+ L +QFT++ F + PRE N A+
Sbjct: 506 LN--NDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAER 547
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 75 IPRIKLFLWKCCTNSLPVKEK-IGKYIGNSYSCINCMENETLDHVMLHCNYARAIW 129
+P+IKLFLWK +LPV + + ++I +++ C C ET H++ HC++A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW 56
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 69 IWNMNTIPRIKLFLWKCCTNSLPVKEKI-GKYIGNSYSCIN-CMENETLDHVMLHCNYAR 126
IW ++ P+IK FLW+C T +L ++ + I C C+E ET+ H+M +C Y +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 127 AIWFTFQMVARINNTSTTPLNLE 149
++W + ++ I N P + E
Sbjct: 97 SVWRSANII--IGNQWGPPSSFE 117
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 29 KEDTAKWTLTKSGNFTIKSMYNYLRTGSS------GPMHDQNDW-FFIWNMNTIPRIKLF 81
K D W +G +T++S Y L S P H D IWN+ +P++K F
Sbjct: 115 KPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHF 174
Query: 82 LWKCCTNSLPVKEKI-GKYIGNSYSCINC-MENETLDHVMLHCNYARAIW 129
LW+ + +L E++ + + SC C ENE+++H + C +A W
Sbjct: 175 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW 224
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 69 IWNMNTIPRIKLFLWKCCTNSLPVKEKIG-KYIGNSYSCIN-CMENETLDHVMLHCNYAR 126
IW + T P+IK FLWK + +L + + ++I N C C E+ET H+ C YA+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 127 AIW 129
+W
Sbjct: 78 QVW 80