BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0890.1
(217 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C... 48 2e-06
>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
Length = 405
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 7 VSEDPD---ECFSATEVSEKIFDKWMLDSGASHYMCPNREWFTTY--------RSIDGDT 55
++E PD ECFS E I W++ S S++M P+ ++FTT + I GD
Sbjct: 248 LNEVPDHVAECFSKYTFHENI---WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDK 304
Query: 56 VITGNDNVCKTVGLGTIRIKMHDGVVRTLTDVRHIPDLRKNLISLGVLERNGCKIIIENG 115
T V G+G + ++G +T+ +V ++P + N +S+ L+RNG ++ +E
Sbjct: 305 SET---TVAMVEGIGDVTFITNEGN-KTIKNVLYVPGIEGNALSVSQLKRNGFEVSMERR 360
Query: 116 SIKVVKGSLVVMRDYGRLKFFG---------CTDYYYVKGN 147
+ G V R G K FG C + ++GN
Sbjct: 361 T-----GCFVWDRTTG--KMFGKNMWEKRGFCLRFSVIEGN 394