BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0930.1
(148 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 66 2e-14
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 45 5e-06
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 65.9 bits (159), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 55 LVNGRPGPIFYPSRGIRQGDPLSPFLFTLAMEAFSRLINAEHDENKFIGFPTNNPNLNIS 114
++NG P + PSRG+RQGDPLSP+LF L E S L ++ + G +N + I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 115 HLLFADD 121
HLLFADD
Sbjct: 73 HLLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 2 KGATRYFGLKLDMSKAFDRIEWNFLTDIMSKLGYSEHWIKMITQCISTSSMAVLVNGRPG 61
KG + LKLD+ KA+DRI W++L D + G+ E W+ I + + GR
Sbjct: 44 KGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRAD 103
Query: 62 PIFYPSR-----GIRQGDPLSPF 79
P G R D +PF
Sbjct: 104 ASKRPRVSDHRWGFRYDDMAAPF 126