BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0940.1
(372 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 114 2e-27
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 83 4e-17
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 83 5e-17
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 83 5e-17
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 81 3e-16
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 114 bits (285), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 29/281 (10%)
Query: 64 AVPRFQMQCFALPKGICKSISTLQKSFWW---GKSKGICTKSWSNYLPSKKLGGIGIHSP 120
A+P + M CF LPK +CK I ++ FWW ++KG+ K+W + K GGIG
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 121 ELDNQAMLSKLAWKIKAEPKAISVQFLKAKYYNNSE---NPSSAKPHHSWHWKNISKHLN 177
E N A+L K W++ + P+++ + K++Y++ S+ P ++P S+ WK+I
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRP--SFVWKSIHASQE 119
Query: 178 NIDRFSTWEVHNDEKIDVWKDNWIPT--------LHHPPSNLYN--SQISKVSQLIEQD- 226
+ + + V N E I +W+ W+ + + P Y S I KVS LI++
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 227 -KWNEELLNNTFDVNTRNLILSIPIAGNN-EDRRRWSLTKSGHFSVKSMYQNLCISMN-- 282
+W ++++ F R LI + G D W T SG ++VKS Y L +N
Sbjct: 180 REWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 283 ------SPLPLSPNWNFIWSIPVIPRIKMFTWKICVKALPV 317
S L+P + IW P+I+ F WK +LPV
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPV 280
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 14 KYLGAQLFIGGQKKKVFNDILQKIKNKLEKWNHNFLSQVGRTIVISTIAAAVPRFQMQCF 73
+YLG L + +++KI+ ++ KW LS GR +IS++ ++ F M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 ALPKGICKSISTLQKSFWWGKSKGICTK---SWSNYLPSKKLGGIGIHSPELDNQAMLSK 130
LP K I ++ SF W + K +WS+ K GG+GI S + N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 131 LAWKIKAEPKAISVQFL------KAKYYNNSENPSSAKPHHSWHWKNISKHLNNIDRFST 184
L W++ + ++ VQ+L K +++ S N + SW WK I KH F
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 200
Query: 185 WEVHNDEKIDVWKDNW 200
++HN W DNW
Sbjct: 201 HDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 14 KYLGAQLFIGGQKKKVFNDILQKIKNKLEKWNHNFLSQVGRTIVISTIAAAVPRFQMQCF 73
+YLG L + +++KI+ ++ KW LS GR +IS++ ++ F M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 ALPKGICKSISTLQKSFWWGKSKGICTK---SWSNYLPSKKLGGIGIHSPELDNQAMLSK 130
LP K I ++ SF W + K +WS+ K GG+GI S + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWKIKAEPKAISVQFL------KAKYYNNSENPSSAKPHHSWHWKNISKHLNNIDRFST 184
L W++ + ++ VQ+L K +++ S N + SW WK I KH F
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 185 WEVHNDEKIDVWKDNW 200
++HN W DNW
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 14 KYLGAQLFIGGQKKKVFNDILQKIKNKLEKWNHNFLSQVGRTIVISTIAAAVPRFQMQCF 73
+YLG L + +++KI+ ++ KW LS GR +IS++ ++ F M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 ALPKGICKSISTLQKSFWWGKSKGICTK---SWSNYLPSKKLGGIGIHSPELDNQAMLSK 130
LP K I ++ SF W + K +WS+ K GG+GI S + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWKIKAEPKAISVQFL------KAKYYNNSENPSSAKPHHSWHWKNISKHLNNIDRFST 184
L W++ + ++ VQ+L K +++ S N + SW WK I KH F
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 185 WEVHNDEKIDVWKDNW 200
++HN W DNW
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 14 KYLGAQLFIGGQKKKVFNDILQKIKNKLEKWNHNFLSQVGRTIVISTIAAAVPRFQMQCF 73
+YLG L + +++KI+ ++ KW LS GR +IS++ ++ F M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 ALPKGICKSISTLQKSFWWGKSKGICTK---SWSNYLPSKKLGGIGIHSPELDNQAMLSK 130
LP K I ++ SF W + K +WS+ K GG+GI S + N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 131 LAWKIKAEPKAISVQFL------KAKYYNNSENPSSAKPHHSWHWKNISKHLNNIDRFST 184
L W++ + ++ VQ+L K +++ S N + SW WK I KH F
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 254
Query: 185 WEVHNDEKIDVWKDNW 200
++HN W DNW
Sbjct: 255 HDIHNGSNTSFWFDNW 270