BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0950.1
(389 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 96 4e-21
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 66 8e-13
AT2G22440.1 | non-LTR retroelement reverse transcriptase | Chr2:... 57 6e-09
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 47 2e-05
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 47 2e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 1 MGLSLLPQGTLNQLEKLERNFWWDHNENERRMHFLPWECINKPKELGGLGVRKLSKVNQS 60
M LLP+ Q+ + +FWW + + + MH+ W+ ++ K GG+G + + N +
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 61 LVAKIAWRLLVHPNTTWANIISAKYYRGVTFWDAQNKSNATPLWKALIHVKDTLRSRVCW 120
L+ K WR+L P + A + ++Y+ +A S + +WK++ ++ LR
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 121 QVG-GSTLKILQDPWIPNAPSFKPTFREQLPENIYW-------VSDLIDHTSNKWKLDII 172
VG G + I + W+ + P+ +++P Y VSDLID + +W+ D+I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 173 QRYCTEESAKFIYEINLSRLMVVDRLIWVPTENGQFTTKSFF 214
+ E K I E+ ++D W T +G +T KS +
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY 229
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 66.2 bits (160), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 21 FWWDHNENERRMHFLPWECINKPKEL-GGLGVRKLSKVNQSLVAKIAWRLLVHPNTTWAN 79
FWW EN+R++ ++ W+ + K KE GGLG R L NQ+L+AK ++R++ P+T +
Sbjct: 28 FWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSR 87
Query: 80 IISAKYYRGVTFWDAQNKSNATPLWKALIHVKDTLRSRVCWQVG-GSTLKILQDPWIPNA 138
++ ++Y+ + + + + W+++IH ++ L + +G G K+ D WI +
Sbjct: 88 LLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDE 147
Query: 139 PSFKP 143
P
Sbjct: 148 TPLPP 152
>AT2G22440.1 | non-LTR retroelement reverse transcriptase |
Chr2:9528910-9529917 FORWARD LENGTH=256 | 201606
Length = 256
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 27/200 (13%)
Query: 128 KILQDPWIPNAPSFKPTFREQLPENIYWVSDLIDHTSNKWKLDIIQRYCTEESAKFIYEI 187
++ +DPWIP + + +++ +V+DLID +N WKLD +Q I I
Sbjct: 4 RVWKDPWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLILGI 63
Query: 188 NLSRLMVVDRLIWVPTENGQFTTKSFF---KEIS--SYLPNARASAD-FPWSKLLEDY-- 239
SR + D W T++G +T KS + +++S + P + + FP + L ++
Sbjct: 64 RPSRTYLSDGFSWSHTKSGNYTVKSGYWVARDLSRPTCDPPFQGPGNIFPRNSLFYNFDF 123
Query: 240 -FYRTKGTWEESPEELIRSLILEHKSNPKKTKYYFYLLWLFWKAKNGLIFKNKQLHLPSI 298
F+R + E K + + +++W WK+KN +F+N + P
Sbjct: 124 LFWRDR----------------EFGIGEKVLELFPWIIWYIWKSKNRFVFENFREPPPET 167
Query: 299 ILKAVK--AINNEPSVTSDD 316
++ A++ A+ + ++ DD
Sbjct: 168 LVLALQETAVWKQATLKEDD 187
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 6 LPQGTLNQLEKLERNFWWDHNENERRMHFLPWECINKPKELGGLGVRKLSKVNQSLVAKI 65
LP + +++ + +F W E + + W + PK+ GGLG+R L + N+ + K+
Sbjct: 141 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 200
Query: 66 AWRLLVHPNTTWANIISAKYYRGVTFWD-AQNKSNATPLWKALI 108
WR+L + W + R +FW + N + + +WK ++
Sbjct: 201 IWRML-SSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 6 LPQGTLNQLEKLERNFWWDHNENERRMHFLPWECINKPKELGGLGVRKLSKVNQSLVAKI 65
LP + +++ + +F W E + + W + PK+ GGLG+R L + N+ + K+
Sbjct: 141 LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKL 200
Query: 66 AWRLLVHPNTTWANIISAKYYRGVTFWD-AQNKSNATPLWKALI 108
WR+L + W + R +FW + N + + +WK ++
Sbjct: 201 IWRML-SSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243