BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1000.1
(1241 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 173 4e-45
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 143 2e-35
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 143 2e-35
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 141 3e-34
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 142 4e-34
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 173 bits (438), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 146/559 (26%), Positives = 260/559 (46%), Gaps = 62/559 (11%)
Query: 705 AVPRYQMQCFALPKGTCKSITTLQKSFWW---GKSKGICTKSWSSICLPKSMGGLGIHSI 761
A+P Y M CF LPK CK I ++ FWW ++KG+ K+W + K+ GG+G I
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 762 ELDNQAMLSKLAWRIKTEPDTMWVKLLKAKYFDRSDNP-GPTKPHHSWIWKNINRYLKMI 820
E N A+L K WR+ + P+++ K+ K++YF +SD P S++WK+I+ +++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 821 ENFTVWEVHNGKSINIWTDNWIPNTPS--------IPHNQNPNLK---EVAQLIHHG--K 867
V NG+ I IW W+ + P+ +P + ++ +V+ LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 868 WDENLLNQEFDNETKNLILTI-PIVTLGEDQRKWTLTKNGKFSVKSMYQHLRLSMN---S 923
W ++++ F + LI + P D W T +G ++VKS Y L +N S
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 924 PQPWS-----PNWNFLWSLPVVPRVQIFIWKICNNALPTKDRIG-KYTDKNQ---KCPNC 974
PQ S P + +W P++Q F+WK +N+LP + ++ K +CP+C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301
Query: 975 NETETIEHAILHCPIAKNIWFYFNI-------ISENISSIRDWIFTWENNNVTDCAVNNI 1027
ET+ H + C A+ W +I +++I W+F N N + +
Sbjct: 302 K--ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 359
Query: 1028 HFATIMWNIWKIRCDHCFQHEINNLENMIS---------IITTFPQIHKEQDQNNKTRQD 1078
++W +WK R + F+ N + ++ I T + + Q N++
Sbjct: 360 -VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 1079 KWAPPISPFVKINVDASFVDIHHITGISLVIHDNESKL-LEAATSTTRSRKSEEAEAIAV 1137
+W PP +VK N DA++ + GI V+ + + ++ A + + + EAE
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE---- 474
Query: 1138 LHGMQWA----ESHEYKQIIIESDNINIIKFLQKGKNNIQWQS-QVHLSKILEIRNRLEA 1192
L M+WA +Y +I ESD+ +I+ L N+ W S + + + + ++
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILN---NDEIWPSLKPTIQDLQRLLSQFTE 531
Query: 1193 VKFSHTSRKFNGVADKLAK 1211
VKF R+ N +A+++A+
Sbjct: 532 VKFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 183/438 (41%), Gaps = 38/438 (8%)
Query: 582 ISHLLFADDCIIFGRNSLDNLHSLKSILKEFCEASGQMINYAKSNIFYSKNSHPKFKRMI 641
I+HL FADD ++F ++ + I +F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 642 MRTLKVRYAATSEKYLGTQLFIGANKKQIFNDILLNIKIKLDKWNHSFLSQAGRTIVIST 701
+ + A +YLG L + ++ I++++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 702 IAAAVPRYQMQCFALPKGTCKSITTLQKSFWWGKSKGICTK---SWSSICLPKSMGGLGI 758
+ ++ + M F LP K I ++ SF W + K +WS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 759 HSIELDNQAMLSKLAWRIKTEPDTMWVKLLKAKYFDRSD--NPGPTKPHHSWIWKNINRY 816
S++ N+ L KL WR+ + ++WV+ L+ + + SW+WK I ++
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 817 LKMIENFTVWEVHNGKSINIWTDNWIPNTPSIPHNQNPNLKEVAQLIHHGKWDENLLNQE 876
+ F ++HNG + + W DNW I + ++ +H E ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV-AEAVVNHR 304
Query: 877 FDNETKNLILTIPIV---------TLGEDQRKWTLTKNGKFSVKSMYQHLRLSMNSPQPW 927
+ +L I V T GED +W NG + N+ + W
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDI--------FKPCFNTKETW 354
Query: 928 SP--------NW-NFLWSLPVVPRVQIFIWKICNNALPTKDRIGKY-TDKNQKCPNCNE- 976
+ NW +W P+ + W N L T DR+ + + C C+
Sbjct: 355 AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHL 414
Query: 977 TETIEHAILHCPIAKNIW 994
ET +H CP + +W
Sbjct: 415 VETRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 183/438 (41%), Gaps = 38/438 (8%)
Query: 582 ISHLLFADDCIIFGRNSLDNLHSLKSILKEFCEASGQMINYAKSNIFYSKNSHPKFKRMI 641
I+HL FADD ++F ++ + I +F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 642 MRTLKVRYAATSEKYLGTQLFIGANKKQIFNDILLNIKIKLDKWNHSFLSQAGRTIVIST 701
+ + A +YLG L + ++ I++++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 702 IAAAVPRYQMQCFALPKGTCKSITTLQKSFWWGKSKGICTK---SWSSICLPKSMGGLGI 758
+ ++ + M F LP K I ++ SF W + K +WS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 759 HSIELDNQAMLSKLAWRIKTEPDTMWVKLLKAKYFDRSD--NPGPTKPHHSWIWKNINRY 816
S++ N+ L KL WR+ + ++WV+ L+ + + SW+WK I ++
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 817 LKMIENFTVWEVHNGKSINIWTDNWIPNTPSIPHNQNPNLKEVAQLIHHGKWDENLLNQE 876
+ F ++HNG + + W DNW I + ++ +H E ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV-AEAVVNHR 304
Query: 877 FDNETKNLILTIPIV---------TLGEDQRKWTLTKNGKFSVKSMYQHLRLSMNSPQPW 927
+ +L I V T GED +W NG + N+ + W
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDI--------FKPCFNTKETW 354
Query: 928 SP--------NW-NFLWSLPVVPRVQIFIWKICNNALPTKDRIGKY-TDKNQKCPNCNE- 976
+ NW +W P+ + W N L T DR+ + + C C+
Sbjct: 355 AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHL 414
Query: 977 TETIEHAILHCPIAKNIW 994
ET +H CP + +W
Sbjct: 415 VETRDHLFFTCPYSAEVW 432
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 28/403 (6%)
Query: 48 IVIGDLNVILDNKDKEG---GKLGMNSNNHRIQTHINNLNLTDIGFKGYPYTWNNRQFGE 104
I++GD + I D + M Q + + +L DI +G YTW+N Q +
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMR-GLEEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DD 279
Query: 105 NFIQERLDKALANLPWLNKFQRSSISHLESVG-SDHLPILLEDTDLGSNKPKPFKFMRTW 163
N I +LD+A+AN W + F S+I+ E G SDH P ++ +L K F++
Sbjct: 280 NPIIRKLDRAIANGDWFSSFP-SAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYFSFL 338
Query: 164 MTHPDCHKFIADKWTNHNNIQINLKNLSRHLTK-------WNKTVFGNIEYNIKELTTKL 216
THP + W + ++ +L HL N+ FGNI++ KE L
Sbjct: 339 STHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSL 398
Query: 217 NNIKTK---NEYNSI-------HKQLEELYTLQESLWKEKSRNNFITVGDKNTKFFHSQA 266
+I+++ N +S+ K+ ES +++KSR ++ GD NT+FFH
Sbjct: 399 ESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVI 458
Query: 267 IQRNRTNKISAIKNPNGDWQEGLESIQ---ATFTSHLLNISTSQGNNDS-QDILNLFQPT 322
+ N I ++ + E + ++ + +HLL + DS Q I ++
Sbjct: 459 LANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFR 518
Query: 323 ITQEQNIDLTRIPDQEEINNAINSLKKEAAPGPDGYPPFFFQSNWDTVSPNICYLVQEFF 382
L+ +P +EI A+ ++ + APGPD + FF +W V + V+EFF
Sbjct: 519 CNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFF 578
Query: 383 VEAELLQGTNHTHVCLIPKTSTPQTPADFRPISLLNTTYKIIT 425
LL+ N T + LIPK + + FRP+S YKIIT
Sbjct: 579 RTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 38/439 (8%)
Query: 582 ISHLLFADDCIIFGRNSLDNLHSLKSILKEFCEASGQMINYAKSNIFYSKNSHPKFKRMI 641
I+HL FADD ++F ++ + I +F + SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 642 MRTLKVRYAATSEKYLGTQLFIGANKKQIFNDILLNIKIKLDKWNHSFLSQAGRTIVIST 701
+ + A +YLG L + ++ I++++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 702 IAAAVPRYQMQCFALPKGTCKSITTLQKSFWWGKSKGICTK---SWSSICLPKSMGGLGI 758
+ ++ + M F LP K I ++ SF W + K +WS +C PK GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 759 HSIELDNQAMLSKLAWRIKTEPDTMWVKLLKAKYFDRSD--NPGPTKPHHSWIWKNINRY 816
S++ N+ L KL WR+ + ++WV+ L+ + + SW+WK I ++
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 817 LKMIENFTVWEVHNGKSINIWTDNWIPNTPSIPHNQNPNLKEVAQLIHHGKWDENLLNQE 876
+ F ++HNG + + W DNW I + ++ + H E ++N
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMG-ITLHASVAEAVVNHR 304
Query: 877 FDNETKNLILTIPIV---------TLGEDQRKWTLTKNGKFSVKSMYQHLRLSMNSPQPW 927
+ +L I V T GED +W NG + N+ + W
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDI--------FKPCFNTKETW 354
Query: 928 SP--------NW-NFLWSLPVVPRVQIFIWKICNNALPTKDRIGKY-TDKNQKCPNCNE- 976
+ NW +W P+ + W N L T DR+ + + C C+
Sbjct: 355 AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHL 414
Query: 977 TETIEHAILHCPIAKNIWF 995
ET +H CP + + F
Sbjct: 415 VETRDHLFFTCPYSAEVPF 433