BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1050.1
(90 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50590.2 | Transducin/WD40 repeat-like superfamily protein | ... 64 2e-13
AT3G50590.1 | Transducin/WD40 repeat-like superfamily protein | ... 64 2e-13
>AT3G50590.2 | Transducin/WD40 repeat-like superfamily protein |
Chr3:18771292-18779220 FORWARD LENGTH=1606 | 201606
Length = 1606
Score = 63.9 bits (154), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/37 (78%), Positives = 33/37 (89%)
Query: 6 EFDALTGSKIASIDIGAPVVRMLYSPTTGHTVIAILE 42
EFDALTG KIASIDIG+P VRMLYSPT+ + V+AILE
Sbjct: 46 EFDALTGCKIASIDIGSPAVRMLYSPTSSNAVVAILE 82
>AT3G50590.1 | Transducin/WD40 repeat-like superfamily protein |
Chr3:18771292-18779220 FORWARD LENGTH=1614 | 201606
Length = 1614
Score = 63.9 bits (154), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/37 (78%), Positives = 33/37 (89%)
Query: 6 EFDALTGSKIASIDIGAPVVRMLYSPTTGHTVIAILE 42
EFDALTG KIASIDIG+P VRMLYSPT+ + V+AILE
Sbjct: 46 EFDALTGCKIASIDIGSPAVRMLYSPTSSNAVVAILE 82