BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1120.1
(955 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 196 4e-51
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 196 4e-51
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 128 6e-31
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 95 4e-22
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 52 9e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 145/230 (63%), Gaps = 7/230 (3%)
Query: 729 EPQTYSQAMTSPDAPFWKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFKRKQKPDG 788
EP TY++A + W A+ E+ ++ +TW++ LPP K IG KW++K K DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 789 TVEKYKARLVAKGFRQKEGRDFFDTYSPVTRITSIRILIAIAAIYNLDIHQMDVKTTFLN 848
T+E+YKARLVAKG+ Q+EG DF +T+SPV ++TS+++++AI+AIYN +HQ+D+ FLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 849 GELEEEIYMDQPEGFEVKGLE----NKVCKLIKSLYGLKQAPNQWHEKFDQIVLENGFKI 904
G+L+EEIYM P G+ + + N VC L KS+YGLKQA QW KF ++ GF
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 905 NESDKCVYTKCVNGCYVIICLYVDDMLILGTSLEIINQTKELLIKNFERK 954
+ SD + K ++ + +YVDD++I + +++ K L F+ +
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 311
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 145/230 (63%), Gaps = 7/230 (3%)
Query: 729 EPQTYSQAMTSPDAPFWKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFKRKQKPDG 788
EP TY++A + W A+ E+ ++ +TW++ LPP K IG KW++K K DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 789 TVEKYKARLVAKGFRQKEGRDFFDTYSPVTRITSIRILIAIAAIYNLDIHQMDVKTTFLN 848
T+E+YKARLVAKG+ Q+EG DF +T+SPV ++TS+++++AI+AIYN +HQ+D+ FLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 849 GELEEEIYMDQPEGFEVKGLE----NKVCKLIKSLYGLKQAPNQWHEKFDQIVLENGFKI 904
G+L+EEIYM P G+ + + N VC L KS+YGLKQA QW KF ++ GF
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 905 NESDKCVYTKCVNGCYVIICLYVDDMLILGTSLEIINQTKELLIKNFERK 954
+ SD + K ++ + +YVDD++I + +++ K L F+ +
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLR 311
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 18/292 (6%)
Query: 9 KPEKFDGQNFKRWQQKMLFFLTTLNINYVLTEQATTVVGENEP-------GRSGAV-EAW 60
K +FDG+++ W +M FL L + YVL+E ++ P R+ A + W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253
Query: 61 NKADYLCRNYILNCLDNILYDIYCHT-KTAKELWDSLQEKYISEDAGIKKFVVRRFLDYK 119
+ DYLC +++N L + LY Y K AKELWD L+ Y +++ K+ VR++++++
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313
Query: 120 MEDEKSVVSQLQELRLILNEIKTEGMVIDEAFQVAAVIEKLPPSWNDYKKKLRHKRKDID 179
M +E+ ++ Q+Q I + I + GM +DEAF V+ +I K PPSW + +L + +
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEY-LP 372
Query: 180 MQYLILQIRVEEEHLKQEKNEMAASLVSKAHIVEEVKKKKLTNYKPSNQRKKGNSKFKRA 239
+ L+ +++ EEE L+ + + + +E T+ R + +KR
Sbjct: 373 VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTH------RGSQSVGWKRK 426
Query: 240 GSKPNHGNSKPCYVCGKSGHLAKDCRHRKTNPNPPTKHPRPN--LAHVVETE 289
+ + C CG+ GHLAK C K++ K R N +A VE+E
Sbjct: 427 EPERDERVIIVCDNCGRKGHLAKHCWGSKSDERASGKSNRINSSVAAPVESE 478
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 95.1 bits (235), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 722 LTYLTEDEPQTYSQAMTSPDAPFWKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFK 781
+T + EP++ A+ P W +A+ E+D++ +N TW LV P +G KW+FK
Sbjct: 20 ITTTIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76
Query: 782 RKQKPDGTVEKYKARLVAKGFRQKEGRDFFDTYSPVTRITSIRILIAIA 830
K DGT+++ KARLVAKGF Q+EG F +TYSPV R +IR ++ +A
Sbjct: 77 TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 549 NRTLKEMMNSMLVSSGLPSNFWGEAILSACYVLNRVPSKTQD-KTPYELWKGRKPSFKHL 607
NRT+ E + SML GLP F +A +A +++N+ PS + P E+W P++ +L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 608 KVWGCLAKV 616
+ +GC+A +
Sbjct: 62 RRFGCVAYI 70