BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1160.1
(148 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 56 1e-09
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 52 2e-08
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 51 5e-08
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 46 3e-06
AT3G26855.1 | RNA-directed DNA polymerase (reverse transcriptase... 43 2e-05
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 25 IWSLPTIPRVKIFIWKIYTKALSVRERI---GKYIDNNTKCPNC-MNTETIEHALLHCAL 80
IW+LP +P++K F+W+ ++AL+ ER+ G ID CP C E+I HAL C
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID--PSCPRCHRENESINHALFTCPF 219
Query: 81 AKNVW--FNFNIISEKITSTSDWIFSWEENTN------QCYTSEDIHFASILWILWKV 130
A W + ++I ++ S +EEN + Q T D H +W++W++
Sbjct: 220 ATMAWRLSDSSLIRNQLMSN-----DFEENISNILNFVQDTTMSDFHKLLPVWLIWRI 272
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 25 IWSLPTIPRVKIFIWKIYTKALSVRERIG-KYIDNNTKCPN-CMNTETIEHALLHCALAK 82
IW L T P++K F+WK+ + AL+ + + ++I N+ +C C ET +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 83 NVWFNFNIISEKITSTSDWIFS-WEENTNQCYTSEDIHFAS----ILWILWKVRCDHCFQ 137
VW I +++ +T + + E + C + + ILW LWK R FQ
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQ 137
Query: 138 HE 139
+
Sbjct: 138 QK 139
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 50.8 bits (120), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 23 KFIWSLPTIPRVKIFIWKIYTKALSVRERI-GKYIDNNTKCPN-CMNTETIEHALLHCAL 80
+ IW L P++K F+W+ T AL+ R+ + ID + C C+ ETI H + +C
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94
Query: 81 AKNVWFNFNIISEKITSTSDWIFSWEENTN--------QCYTSEDIHFAS-ILWILWKVR 131
++VW + NII I + S+E+N N Q S D I+W LWK R
Sbjct: 95 TQSVWRSANII---IGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 132 CDHCFQHE 139
FQ +
Sbjct: 152 NVFLFQQK 159
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 45.8 bits (107), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 31 IPRVKIFIWKIYTKALSVRER-IGKYIDNNTKCPNCMNTETIEHALLHCALAKNVW 85
+P++K+F+WK AL V + + ++I + C C ET H L HC A VW
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVW 56
>AT3G26855.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9898680-9899350 REVERSE LENGTH=163 | 201606
Length = 163
Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 25 IWSLPTIPRVKIFIWKIYTKALSVRER-IGKYIDNNTKCPNCMNTETIEHALLHCALAKN 83
IWSL P++K+ IWK AL V + + + I C C + ETI H L +C A+
Sbjct: 9 IWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNCPFAQR 68
Query: 84 VWFNFNIISEKITSTSDWIFSWEENTNQCY 113
+II K T+ + S +T +
Sbjct: 69 EVIMKSIIDAKEWQTAQQMGSMLGSTPSLF 98