BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1240.1
(167 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50590.1 | Transducin/WD40 repeat-like superfamily protein | ... 173 3e-50
AT3G50590.2 | Transducin/WD40 repeat-like superfamily protein | ... 172 6e-50
>AT3G50590.1 | Transducin/WD40 repeat-like superfamily protein |
Chr3:18771292-18779220 FORWARD LENGTH=1614 | 201606
Length = 1614
Score = 173 bits (438), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/170 (54%), Positives = 115/170 (67%), Gaps = 26/170 (15%)
Query: 1 MKGIPQWELAGEVMPYMKTDDGTIPSIISDHIGVYLGIIKGRGDVIEVREDSLVKAFTVA 60
MK IP+WELAGEVMPYMK +DGTIPSI++DHIGVYLG +KGR +V+E++EDSLV
Sbjct: 1025 MKSIPKWELAGEVMPYMKNEDGTIPSIVADHIGVYLGCVKGRVNVVEIKEDSLV------ 1078
Query: 61 NADKTANGIQASAFTNLSNKSKGMGDNNLV-----GAALPGLETLAKQTGGSTGADEQAR 115
S LS K + D L +++ GLE+L KQ ADEQA+
Sbjct: 1079 -----------SKPGGLSLLGKPVSDKPLALPAGESSSMMGLESLGKQ----NVADEQAK 1123
Query: 116 AEEEFKKSIYGNAGDGSSSDEEGVSKTKKIHIRIRDKPVAAAVDVNKIKE 165
A EEFKK++YG GDGSSSDEEGV+K KK+ IRIR+KP + VDVNK+KE
Sbjct: 1124 AAEEFKKTMYGATGDGSSSDEEGVTKPKKLQIRIREKPTSTTVDVNKLKE 1173
>AT3G50590.2 | Transducin/WD40 repeat-like superfamily protein |
Chr3:18771292-18779220 FORWARD LENGTH=1606 | 201606
Length = 1606
Score = 172 bits (435), Expect = 6e-50, Method: Composition-based stats.
Identities = 93/170 (54%), Positives = 115/170 (67%), Gaps = 26/170 (15%)
Query: 1 MKGIPQWELAGEVMPYMKTDDGTIPSIISDHIGVYLGIIKGRGDVIEVREDSLVKAFTVA 60
MK IP+WELAGEVMPYMK +DGTIPSI++DHIGVYLG +KGR +V+E++EDSLV
Sbjct: 1017 MKSIPKWELAGEVMPYMKNEDGTIPSIVADHIGVYLGCVKGRVNVVEIKEDSLV------ 1070
Query: 61 NADKTANGIQASAFTNLSNKSKGMGDNNLV-----GAALPGLETLAKQTGGSTGADEQAR 115
S LS K + D L +++ GLE+L KQ ADEQA+
Sbjct: 1071 -----------SKPGGLSLLGKPVSDKPLALPAGESSSMMGLESLGKQ----NVADEQAK 1115
Query: 116 AEEEFKKSIYGNAGDGSSSDEEGVSKTKKIHIRIRDKPVAAAVDVNKIKE 165
A EEFKK++YG GDGSSSDEEGV+K KK+ IRIR+KP + VDVNK+KE
Sbjct: 1116 AAEEFKKTMYGATGDGSSSDEEGVTKPKKLQIRIREKPTSTTVDVNKLKE 1165