BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1340.1
(274 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52990.2 | thioredoxin family protein | Chr1:19741201-1974344... 47 4e-06
AT1G52990.1 | thioredoxin family protein | Chr1:19740503-1974344... 47 8e-06
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 47 1e-05
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 45 3e-05
>AT1G52990.2 | thioredoxin family protein | Chr1:19741201-19743449
REVERSE LENGTH=243 | 201606
Length = 243
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 150 LAKGSAKTLGR-TVDEGESKACLFGLKWAAQHNLKHIILEGDSLNVINFLNDRQNSIHWT 208
L G K GR T +E E A ++ ++ + +I EGD+ NV +N + ++
Sbjct: 77 LECGMGKFQGRMTPEEAECSALIWAIQATSAFGYTKVIFEGDNSNVNRLINTKSDNPR-- 134
Query: 209 ATRVLKEVKSMVSSFDHIRFLFVNRKFNTLAHTMAVNSRKTSTCY--FNC 256
L +KS + SF F+F +R+ N A T+ + K+ST + FNC
Sbjct: 135 LKHYLDTIKSWIPSFTSTEFIFTHREQNQCADTLVKKAIKSSTQWSLFNC 184
>AT1G52990.1 | thioredoxin family protein | Chr1:19740503-19743449
REVERSE LENGTH=313 | 201606
Length = 313
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 150 LAKGSAKTLGR-TVDEGESKACLFGLKWAAQHNLKHIILEGDSLNVINFLNDRQNSIHWT 208
L G K GR T +E E A ++ ++ + +I EGD+ NV +N + ++
Sbjct: 77 LECGMGKFQGRMTPEEAECSALIWAIQATSAFGYTKVIFEGDNSNVNRLINTKSDNPR-- 134
Query: 209 ATRVLKEVKSMVSSFDHIRFLFVNRKFNTLAHTMAVNSRKTSTCY--FNC 256
L +KS + SF F+F +R+ N A T+ + K+ST + FNC
Sbjct: 135 LKHYLDTIKSWIPSFTSTEFIFTHREQNQCADTLVKKAIKSSTQWSLFNC 184
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 15 KVSQLITSSS-NWNLHLLHNLFQPDIINKILSIPITTQK---DTQKWNLSHAGTFSVSSM 70
KVS LI S W ++ LF P++ K++ + D+ W+ + +G ++V S
Sbjct: 170 KVSDLIDESGREWRKDVIEMLF-PEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSG 228
Query: 71 YKHLIHEHND-SNPTSISR------WKKQWTLRLHPRILLFLWKLSHNILPVNSIL---H 120
Y L N S+P +S ++K W + P+I FLWK N LPV L H
Sbjct: 229 YWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRH 288
Query: 121 RFIQTISTTCPLCNEEEETMMHLI 144
++ CP C +ET+ HL+
Sbjct: 289 LSKESACIRCPSC---KETVNHLL 309
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 164 EGESKACLFGLKWAAQHNLKHIILEGDSLNVINFLNDRQNSIHWTATRVLKEVKSMVSSF 223
E E+KA L L+ + +EGD +IN +N S H + L+++ + F
Sbjct: 378 EAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI--SFHSSLANHLEDISFWANKF 435
Query: 224 DHIRFLFVNRKFNTLAHTMAVNSRKTSTCY 253
I+F F+ RK N LAH +A ST Y
Sbjct: 436 ASIQFGFIRRKGNKLAHVLAKYGCTYSTFY 465