BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1350.1
(237 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 146 8e-40
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 146 8e-40
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 112 4e-30
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 70 3e-15
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 146 bits (368), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%)
Query: 10 VDPTYFKSLIGSLRYLTCTRPDILYGVGLVNRYMETPDESHLNVAKRLLRYIKGTLNDGL 69
VD ++ LIG L YL TR DI + V ++++ E P +H ++L YIKGT+ GL
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432
Query: 70 FFSCAQDFKLIGYSDSDWGRDLDERKSTSGFVFFMGYTAFTWSSKKQPIVSLSTCEAEYV 129
F+S + +L +SD+ + D R+ST+G+ F+G + +W SKKQ +VS S+ EAEY
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492
Query: 130 AASSMVCHAIWLRNMLKHLQCPQVCPTEVFLDNKSAIVLAKNPVCHERSKHIDTRYHFIR 189
A S +WL + LQ P PT +F DN +AI +A N V HER+KHI++ H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552
Query: 190 E 190
E
Sbjct: 553 E 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 146 bits (368), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%)
Query: 10 VDPTYFKSLIGSLRYLTCTRPDILYGVGLVNRYMETPDESHLNVAKRLLRYIKGTLNDGL 69
VD ++ LIG L YL TR DI + V ++++ E P +H ++L YIKGT+ GL
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432
Query: 70 FFSCAQDFKLIGYSDSDWGRDLDERKSTSGFVFFMGYTAFTWSSKKQPIVSLSTCEAEYV 129
F+S + +L +SD+ + D R+ST+G+ F+G + +W SKKQ +VS S+ EAEY
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492
Query: 130 AASSMVCHAIWLRNMLKHLQCPQVCPTEVFLDNKSAIVLAKNPVCHERSKHIDTRYHFIR 189
A S +WL + LQ P PT +F DN +AI +A N V HER+KHI++ H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552
Query: 190 E 190
E
Sbjct: 553 E 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 112 bits (280), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%)
Query: 11 DPTYFKSLIGSLRYLTCTRPDILYGVGLVNRYMETPDESHLNVAKRLLRYIKGTLNDGLF 70
DP+ F+S++G+L+YLT TRPDI Y V +V + M P + ++ KR+LRY+KGT+ GL+
Sbjct: 96 DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLY 155
Query: 71 FSCAQDFKLIGYSDSDWGRDLDERKSTSGFVFFMGYTAFTWSSKKQPIVSLSTCEAEYVA 130
+ + DSDW R+ST+GF F+G +WS+K+QP VS S+ E EY A
Sbjct: 156 IHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215
Query: 131 ASSMVCHAIW 140
+ W
Sbjct: 216 LALTAAELTW 225
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 69.7 bits (169), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 24 YLTCTRPDILYGVGLVNRYMETPDESHLNVAKRLLRYIKGTLNDGLFFSCAQDFKLIGYS 83
YLT TRPD+ + V ++++ + + ++L Y+KGT+ GLF+S D +L ++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 84 DSDWGRDLDERKSTSGF-----VFFMG 105
DSDW D R+S +GF ++F+G
Sbjct: 62 DSDWASCPDTRRSVTGFCSLVPLWFLG 88