BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1380.1
(1342 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 310 6e-88
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 310 6e-88
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 215 4e-63
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 115 2e-28
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 93 4e-22
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 310 bits (794), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 201/296 (67%)
Query: 1033 FLQSKSDYSLFTFNSGSISIFVLVYVDDIIITGNDDSAISKFKLFLDTTFSLKDLGRLQY 1092
F+QS SD++ F + ++ + VLVYVDDIII N+D+A+ + K L + F L+DLG L+Y
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 1093 FLGIEVSRSSEGFFLCERKYALDIIKDSGLTASKPCSFPMEQKLHLRPSYGDPLPDPTIY 1152
FLG+E++RS+ G +C+RKYALD++ ++GL KP S PM+ + G D Y
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Query: 1153 RRLIGRLLYLTVTRPDIAYSVNNLSQFMQSPSHTHLDAAHRILHYLKGSLDKEIFLSSSS 1212
RRLIGRL+YL +TR DI+++VN LSQF ++P H A +ILHY+KG++ + +F SS +
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438
Query: 1213 SLHLSGYCDSDWAGCPTTRRSTTGYFTMLGSSPLSWKSKKQPTVAKSSAEAEYRALATVT 1272
+ L + D+ + C TRRST GY LG+S +SWKSKKQ V+KSSAEAEYRAL+ T
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498
Query: 1273 CELQWLKYLLKDLGFDHSSPMTVHCDNKAALHIADNPVFHERTKHIEIDCHFVRER 1328
E+ WL ++L S P + CDN AA+HIA N VFHERTKHIE DCH VRER
Sbjct: 499 DEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 924 SAGTTTD-PNRSLIRPQRSRRLPSHLQDYIC-STSSTTPYPLERYFSINAFSASHQVFLA 981
SA D P S+ R R P++LQDY C S +S T + + ++ S S + FL
Sbjct: 19 SANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLV 78
Query: 982 SVLSTSEPTSFPQAMKFPHWREAMAKEITALKSNKTWSIVPLPPGKRPIG 1031
+ EP+++ +A +F W AM EI A+++ TW I LPP K+PIG
Sbjct: 79 CIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 128
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 310 bits (794), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 201/296 (67%)
Query: 1033 FLQSKSDYSLFTFNSGSISIFVLVYVDDIIITGNDDSAISKFKLFLDTTFSLKDLGRLQY 1092
F+QS SD++ F + ++ + VLVYVDDIII N+D+A+ + K L + F L+DLG L+Y
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318
Query: 1093 FLGIEVSRSSEGFFLCERKYALDIIKDSGLTASKPCSFPMEQKLHLRPSYGDPLPDPTIY 1152
FLG+E++RS+ G +C+RKYALD++ ++GL KP S PM+ + G D Y
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378
Query: 1153 RRLIGRLLYLTVTRPDIAYSVNNLSQFMQSPSHTHLDAAHRILHYLKGSLDKEIFLSSSS 1212
RRLIGRL+YL +TR DI+++VN LSQF ++P H A +ILHY+KG++ + +F SS +
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438
Query: 1213 SLHLSGYCDSDWAGCPTTRRSTTGYFTMLGSSPLSWKSKKQPTVAKSSAEAEYRALATVT 1272
+ L + D+ + C TRRST GY LG+S +SWKSKKQ V+KSSAEAEYRAL+ T
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498
Query: 1273 CELQWLKYLLKDLGFDHSSPMTVHCDNKAALHIADNPVFHERTKHIEIDCHFVRER 1328
E+ WL ++L S P + CDN AA+HIA N VFHERTKHIE DCH VRER
Sbjct: 499 DEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 924 SAGTTTD-PNRSLIRPQRSRRLPSHLQDYIC-STSSTTPYPLERYFSINAFSASHQVFLA 981
SA D P S+ R R P++LQDY C S +S T + + ++ S S + FL
Sbjct: 19 SANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLV 78
Query: 982 SVLSTSEPTSFPQAMKFPHWREAMAKEITALKSNKTWSIVPLPPGKRPIG 1031
+ EP+++ +A +F W AM EI A+++ TW I LPP K+PIG
Sbjct: 79 CIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 128
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 215 bits (548), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 152/226 (67%), Gaps = 1/226 (0%)
Query: 1052 IFVLVYVDDIIITGNDDSAISKFKLFLDTTFSLKDLGRLQYFLGIEVSRSSEGFFLCERK 1111
+++L+YVDDI++TG+ ++ ++ L +TFS+KDLG + YFLGI++ G FL + K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1112 YALDIIKDSGLTASKPCSFPMEQKLHLRPSYGDPLPDPTIYRRLIGRLLYLTVTRPDIAY 1171
YA I+ ++G+ KP S P+ KL+ S PDP+ +R ++G L YLT+TRPDI+Y
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISY 119
Query: 1172 SVNNLSQFMQSPSHTHLDAAHRILHYLKGSLDKEIFLSSSSSLHLSGYCDSDWAGCPTTR 1231
+VN + Q M P+ D R+L Y+KG++ +++ +S L++ +CDSDWAGC +TR
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179
Query: 1232 RSTTGYFTMLGSSPLSWKSKKQPTVAKSSAEAEYRALATVTCELQW 1277
RSTTG+ T LG + +SW +K+QPTV++SS E EYRALA EL W
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 115 bits (289), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 10/209 (4%)
Query: 24 DVHHSDSPTTVLITPPLSGDNYSSWARAMKMALRAKDKLGFVDGSIPKPSPPNDT-RSWE 82
D+HH + ++ DNY +W + LR K GF+DG++PKP P + + WE
Sbjct: 23 DIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWE 80
Query: 83 RCNDLVASWIMNSVATDIRSSILYDGSAADIWKNLHDRFFQTNAPNIYQLKRAISSLKQD 142
+CN +V W+MNS+ + S++Y +A +W++L F IYQL+R +++L+Q
Sbjct: 81 QCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQG 140
Query: 143 GLDVSSYFTHLKSLQDELPSLLAIETCICGH-----GKSILDRSNQERAMEFLQG--LHD 195
G V YF L + EL I C CG K + +E+ EFL G L+
Sbjct: 141 GDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQ 200
Query: 196 RFSAIRSQILLMDPFPSILKIHSLVKQEE 224
F A+ ++I+ P PS+ + ++VK E
Sbjct: 201 GFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 93.2 bits (230), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 59/82 (71%)
Query: 1160 LYLTVTRPDIAYSVNNLSQFMQSPSHTHLDAAHRILHYLKGSLDKEIFLSSSSSLHLSGY 1219
+YLT+TRPD+ ++VN LSQF + + A +++LHY+KG++ + +F S++S L L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1220 CDSDWAGCPTTRRSTTGYFTML 1241
DSDWA CP TRRS TG+ +++
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82