BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000108.1_g1470.1
         (520 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    88   2e-20

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 88.2 bits (217), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 3/100 (3%)

Query: 360 IKVVKGSLVVMRGTRYGNLYKLLGTTITGDVAVRISGRDPTACTGLWHMRLGHMSEKGLS 419
           +KV+KG   +++G R+ +LY L G+  TG+  +  + +D T    LWH RL HMS++G+ 
Sbjct: 29  LKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETR---LWHSRLAHMSQRGME 85

Query: 420 LMYGKGLLKDMKKPCMEFCEHCVFGKAHRVTFSSSMHRSK 459
           L+  KG L   K   ++FCE C++GK HRV FS+  H +K
Sbjct: 86  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125

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