BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000108.1_g1500.1
         (415 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...   101   2e-25

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score =  101 bits (251), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 115 GSIKVVKGSLVVMRDTRYGNLYKLLGTTITGHVAVGISGRNPTASTRLWHMRLRHMSEKG 174
           G +KV+KG   +++  R+ +LY L G+  TG   +  + ++    TRLWH RL HMS++G
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRG 83

Query: 175 QSLMCEIGLSKDMKKPCMEFCEHCVFGKAHRVTFSTSKHRIKEVLDYVHTDVW 227
             L+ + G     K   ++FCE C++GK HRV FST +H  K  LDYVH+D+W
Sbjct: 84  MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLW 136

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