BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1570.1
(342 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51120.1 | AP2/B3 transcription factor family protein | Chr1:... 46 2e-05
>AT1G51120.1 | AP2/B3 transcription factor family protein |
Chr1:18938091-18939149 FORWARD LENGTH=352 | 201606
Length = 352
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 267 TRFKGKISQDNRYWGAQLYADNQLIWLETLADNEE--FRYDPSS 308
T+FKG + Q N +WGAQ+YAD++ IWL T E YD +S
Sbjct: 45 TKFKGVVQQQNGHWGAQIYADHRRIWLGTFKSAHEAAAAYDSAS 88