BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1580.1
(458 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 198 3e-55
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 198 3e-55
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 94 4e-22
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 86 7e-19
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 198 bits (504), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 186/328 (56%), Gaps = 47/328 (14%)
Query: 170 DPISFSEAMNSRDCSFWKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPDG 229
+P +++EA ++ W A++DE+ ++ + TW + LPP KPIGC+W++K K N DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 230 SINKFKARLVAKGFKQRHGIDYFDTYAPVARISSIRVLIALASVHHLVIHQMDMKTTFLN 289
+I ++KARLVAKG+ Q+ GID+ +T++PV +++S+++++A++++++ +HQ+D+ FLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 290 GDLEDEVYMEQPEGFISPGQE----------KKSL------------------------- 314
GDL++E+YM+ P G+ + + KKS+
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 315 -QVDKCIYCKVNKSSCVLICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILG 373
D + K+ + + + +YVDD++I +N ++V+E+K L S F ++DLG LG
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLG 321
Query: 374 IKILRKNNVLALSQTHYIEKILKRYDHFDHKPAPTPMDPSIKLLKNTGR----AQAQLEY 429
++I R + + Q Y +L KP+ PMDPS+ ++G A+A Y
Sbjct: 322 LEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA---Y 378
Query: 430 ASVIGSLMYAMHCTRPDIAYAVSVLCRL 457
+IG LMY + TR DI++AV+ L +
Sbjct: 379 RRLIGRLMY-LQITRLDISFAVNKLSQF 405
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 198 bits (504), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 186/328 (56%), Gaps = 47/328 (14%)
Query: 170 DPISFSEAMNSRDCSFWKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPDG 229
+P +++EA ++ W A++DE+ ++ + TW + LPP KPIGC+W++K K N DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 230 SINKFKARLVAKGFKQRHGIDYFDTYAPVARISSIRVLIALASVHHLVIHQMDMKTTFLN 289
+I ++KARLVAKG+ Q+ GID+ +T++PV +++S+++++A++++++ +HQ+D+ FLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 290 GDLEDEVYMEQPEGFISPGQE----------KKSL------------------------- 314
GDL++E+YM+ P G+ + + KKS+
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 315 -QVDKCIYCKVNKSSCVLICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILG 373
D + K+ + + + +YVDD++I +N ++V+E+K L S F ++DLG LG
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLG 321
Query: 374 IKILRKNNVLALSQTHYIEKILKRYDHFDHKPAPTPMDPSIKLLKNTGR----AQAQLEY 429
++I R + + Q Y +L KP+ PMDPS+ ++G A+A Y
Sbjct: 322 LEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA---Y 378
Query: 430 ASVIGSLMYAMHCTRPDIAYAVSVLCRL 457
+IG LMY + TR DI++AV+ L +
Sbjct: 379 RRLIGRLMY-LQITRLDISFAVNKLSQF 405
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 93.6 bits (231), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 62/87 (71%)
Query: 186 WKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPDGSINKFKARLVAKGFKQ 245
W +A+ +E++++ N+TW+L P +GC+W+FK KL+ DG++++ KARLVAKGF Q
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99
Query: 246 RHGIDYFDTYAPVARISSIRVLIALAS 272
GI + +TY+PV R ++IR ++ +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQ 126
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 86.3 bits (212), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 332 ICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILGIKILRKNNVLALSQTHYI 391
+ LYVDD+L+ GS+ + + + LSS F MKDLG LGI+I + L LSQT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 392 EKILKRYDHFDHKPAPTPMDPSIKLLKNTGRAQAQLEYASVIGSLMYAMHCTRPDIAYAV 451
E+IL D KP TP+ + +T + ++ S++G+L Y + TRPDI+YAV
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQY-LTLTRPDISYAV 121
Query: 452 SVLCRLM 458
+++C+ M
Sbjct: 122 NIVCQRM 128