BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1800.1
(275 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52030.2 | TraB family protein | Chr5:21128291-21130034 FORWA... 314 e-106
AT5G52030.1 | TraB family protein | Chr5:21128819-21130034 FORWA... 307 e-105
AT1G05270.1 | TraB family protein | Chr1:1531806-1534305 REVERSE... 97 5e-23
AT2G32340.1 | TraB family protein | Chr2:13732247-13734361 FORWA... 82 8e-18
AT2G32340.2 | TraB family protein | Chr2:13732247-13733861 FORWA... 61 1e-10
>AT5G52030.2 | TraB family protein | Chr5:21128291-21130034 FORWARD
LENGTH=402 | 201606
Length = 402
Score = 314 bits (805), Expect = e-106, Method: Compositional matrix adjust.
Identities = 173/258 (67%), Positives = 203/258 (78%), Gaps = 15/258 (5%)
Query: 26 ESTFRAGIMYISN-EGEPMSNMKSNMFSLSGSGFFGAIG------GQTALALRLLLAVFS 78
++ F AGIMY S+ GE N+KS SL+G+GF GA+G GQTALALRLLLAVFS
Sbjct: 137 QTKFGAGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFS 196
Query: 79 SKLSSNANQPFGNEFRAARKASEEIGAQLVLGDRPIEITLERAWNSLGWNEKLSLVTAVL 138
SKLSS A++PFG+EFRAARKASEE+GAQLVLGDRPIEITL+RAWNSL W EK +LV AV
Sbjct: 197 SKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVT 256
Query: 139 RGITSPLSATTESNLKD--SDKQDSPFQLYEQLSYSYPSLLQPLIHERDTYLAWSLKRSK 196
R ITS S + + LK+ +D+ QLYE+LS+SYP+LL PLIHERDTYLAWSLKRSK
Sbjct: 257 RVITSS-SGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSK 315
Query: 197 AVNNCKRVVGVIGKGHMNGVIYALITDLGDLRFRDLVGKRK-----FGESSNGWIENLLK 251
AVN CK VVGVIGKGHMNGVIYAL++D GDLRFRDLVG+ G +SNGWI+ +LK
Sbjct: 316 AVNGCKTVVGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLK 375
Query: 252 NLVRDTVIGILVWALYEQ 269
+ VRDT+IG L+W LYEQ
Sbjct: 376 SFVRDTIIGFLLWELYEQ 393
>AT5G52030.1 | TraB family protein | Chr5:21128819-21130034 FORWARD
LENGTH=258 | 201606
Length = 258
Score = 307 bits (787), Expect = e-105, Method: Compositional matrix adjust.
Identities = 169/250 (67%), Positives = 197/250 (78%), Gaps = 15/250 (6%)
Query: 34 MYISN-EGEPMSNMKSNMFSLSGSGFFGAIG------GQTALALRLLLAVFSSKLSSNAN 86
MY S+ GE N+KS SL+G+GF GA+G GQTALALRLLLAVFSSKLSS A+
Sbjct: 1 MYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSSVAD 60
Query: 87 QPFGNEFRAARKASEEIGAQLVLGDRPIEITLERAWNSLGWNEKLSLVTAVLRGITSPLS 146
+PFG+EFRAARKASEE+GAQLVLGDRPIEITL+RAWNSL W EK +LV AV R ITS S
Sbjct: 61 RPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSS-S 119
Query: 147 ATTESNLKD--SDKQDSPFQLYEQLSYSYPSLLQPLIHERDTYLAWSLKRSKAVNNCKRV 204
+ + LK+ +D+ QLYE+LS+SYP+LL PLIHERDTYLAWSLKRSKAVN CK V
Sbjct: 120 GISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTV 179
Query: 205 VGVIGKGHMNGVIYALITDLGDLRFRDLVGKRK-----FGESSNGWIENLLKNLVRDTVI 259
VGVIGKGHMNGVIYAL++D GDLRFRDLVG+ G +SNGWI+ +LK+ VRDT+I
Sbjct: 180 VGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTII 239
Query: 260 GILVWALYEQ 269
G L+W LYEQ
Sbjct: 240 GFLLWELYEQ 249
>AT1G05270.1 | TraB family protein | Chr1:1531806-1534305 REVERSE
LENGTH=371 | 201606
Length = 371
Score = 97.4 bits (241), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 85/141 (60%), Gaps = 3/141 (2%)
Query: 77 FSSKLSSNANQPFGNEFRAARKASEEIGAQLVLGDRPIEITLERAWNSLG-WNEKLSLVT 135
F +K++S+ G EFR A + + + G +++LGDRP++ITL+R W + W++ L +
Sbjct: 182 FLAKIASHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYS 241
Query: 136 AVLRGITSPLSATTESNLKDSDKQDSPFQLYEQLSYSYPSLLQPLIHERDTYLAWSLKRS 195
+ + + P + E LKD D D + +++S +P+L+ ++HERD Y+A SL R
Sbjct: 242 ILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLR- 300
Query: 196 KAVNNCKRVVGVIGKGHMNGV 216
++ VV VIGKGH+NG+
Sbjct: 301 -VASDHSSVVAVIGKGHINGI 320
>AT2G32340.1 | TraB family protein | Chr2:13732247-13734361 FORWARD
LENGTH=356 | 201606
Length = 356
Score = 82.4 bits (202), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 90 GNEFRAARKASEEIGAQLVLGDRPIEITLERAWNSLGWNEKLSLVTAVL-RGITSPLSAT 148
G EFR + + + G ++ LGDR ++ITL+R W + K+ LV +++ + + P
Sbjct: 182 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 241
Query: 149 TESNLKDSDKQDSPFQLYEQLSYSYPSLLQPLIHERDTYLAWSLKRSKAVNNCKRVVGVI 208
E LKD D +++S +P+L++ L+HERD Y+A+ L R + ++ VV V+
Sbjct: 242 LEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHS--SVVAVV 299
Query: 209 GKGHMNGV 216
G+GH+ G+
Sbjct: 300 GRGHLQGI 307
>AT2G32340.2 | TraB family protein | Chr2:13732247-13733861 FORWARD
LENGTH=285 | 201606
Length = 285
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 90 GNEFRAARKASEEIGAQLVLGDRPIEITLERAWNSLGWNEKLSLVTAVL-RGITSPLSAT 148
G EFR + + + G ++ LGDR ++ITL+R W + K+ LV +++ + + P
Sbjct: 182 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 241
Query: 149 TESNLKDSDKQDSPFQLYEQLSYSYPSLLQPLIHERDTYLAWSL 192
E LKD D +++S +P+L++ L+HERD + + L
Sbjct: 242 LEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKLVYYPL 285