BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1840.1
(143 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 59 3e-11
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 58 2e-10
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 58 2e-10
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 58.5 bits (140), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 23 TRDRAPSTKYPPHEYVMVTDG--GEPQCYEEALDDVHKEGLKAMQDEIESLHKNNTFKLV 80
TR +A K P + +T EP+ AL D +AMQ+E+++L +N T+ LV
Sbjct: 3 TRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKD--PGWCQAMQEELDALSRNKTWILV 60
Query: 81 EKPKNKKFLKNKWVFKIKTEEKNLQPRYKARLVVKGF 117
P N+ L KWVFK K R KARLV KGF
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 57.8 bits (138), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 38 VMVTDGGEPQCYEEALDDVHKEGL---KAMQDEIESLHKNNTFKLVEKPKNKKFLKNKWV 94
V + EP Y EA KE L AM DEI ++ +T+++ P NKK + KWV
Sbjct: 78 VCIAKAKEPSTYNEA-----KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWV 132
Query: 95 FKIKTEEKNLQPRYKARLVVKGFGKK 120
+KIK RYKARLV KG+ ++
Sbjct: 133 YKIKYNSDGTIERYKARLVAKGYTQQ 158
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 57.8 bits (138), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 38 VMVTDGGEPQCYEEALDDVHKEGL---KAMQDEIESLHKNNTFKLVEKPKNKKFLKNKWV 94
V + EP Y EA KE L AM DEI ++ +T+++ P NKK + KWV
Sbjct: 78 VCIAKAKEPSTYNEA-----KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWV 132
Query: 95 FKIKTEEKNLQPRYKARLVVKGFGKK 120
+KIK RYKARLV KG+ ++
Sbjct: 133 YKIKYNSDGTIERYKARLVAKGYTQQ 158