BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1880.1
(396 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 57 7e-10
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 57.4 bits (137), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 59 VIQDLPTGRILLQGTIRDGLFRLSPVSTQPLTLFAQSLSPGVRTSADTWHTRLGHPHLQI 118
V++ L R +L+G D L+ L + A++ R WH+RL H +
Sbjct: 28 VLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRL----WHSRLAHMSQRG 83
Query: 119 LNFLVRNQLLPLTTSSMSKTK-CVSCINGKHHQFPFGTVTHLSSSPNELIHADLWGPSPV 177
+ LV+ L +S +S K C CI GK H+ F T H + +P + +H+DLWG V
Sbjct: 84 MELLVKKGFLD--SSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141