BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1960.1
(582 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 136 8e-34
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 119 4e-28
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 119 4e-28
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 116 7e-27
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 92 3e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 136 bits (342), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 148/319 (46%), Gaps = 29/319 (9%)
Query: 247 AVPRYQMQCFAIPKGISKSIKAVQRNFWW---GKSKGICTKAWSYICTPKKLGGLGLHLP 303
A+P Y M CF +PK + K I +V +FWW ++KG+ KAW ++ K GG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 304 DLDNTALLSKMAWRLKTEPEAIWVKLLKAKYFPHSNTP--GPAKSHHSWNWKTIRKHYSL 361
+ N ALL K WR+ + PE++ K+ K++YF H + P P S S+ WK+I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 362 LDDLSTWEVQSGNDINIWTDNWIPEINGTIQNNNQ----------SDLTKVAQLI--SNN 409
L + V +G DI IW W+ + Q S + KV+ LI S
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 410 NWNNEVLSANFDVNTQNLIKTI-PVNSEGKDQLKWKLTKSGKFTVASMYQHLSN-NNNNY 467
W +V+ F + LI + P D W T SG +TV S Y L+ N
Sbjct: 181 EWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 468 NPN-------NHNWNFIWSLPTVPRIKMFIWKICTKALPVRERIG-KYIDNNTTCPNCTS 519
+P N + IW T P+I+ F+WK + +LPV + +++ + C C S
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 520 I-ESIEHALLHCALAKNIW 537
E++ H L C A+ W
Sbjct: 301 CKETVNHLLFKCTFARLTW 319
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 188/449 (41%), Gaps = 35/449 (7%)
Query: 124 ISHLLFADDCIIFGKNTIDNIHILKKILQDFCDSSGQMINYAKSNIFYSKNSHPKFKRLI 183
I+HL FADD ++F +I + +I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 184 MRTLKVKYASASEKYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQAGRTVVISA 243
+ + + +YLG L T + ++E I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 244 IAAAVPRYQMQCFAIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGL 300
+ ++ + M F +P K I ++ +F W + K AWS +CTPK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 HLPDLDNTALLSKMAWRLKTEPEAIWVKLLKAKYFPHSN--TPGPAKSHHSWNWKTIRKH 358
N L K+ WR+ + ++WV+ L+ + + + SW WK I KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 359 YSLLDDLSTWEVQSGNDINIWTDNW--IPEINGTIQNNNQSDL-----TKVAQLISNNNW 411
+L ++ +G++ + W DNW I + + D+ VA+ + N+
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 412 NNEVLSANFDVNTQNLIKTIPVN--SEGKDQLKWKLTKSGKFTVASMYQHLSNNNNNYNP 469
+ + +++I + + G+D ++WK +++ N +
Sbjct: 306 RRH--RHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGN-------GDIFKPCFNTKETWAA 356
Query: 470 NNH-----NW-NFIWSLPTVPRIKMFIWKICTKALPVRERIGKY-IDNNTTCPNCTS-IE 521
NW +W P+ + W L +R+ + +++C C +E
Sbjct: 357 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVE 416
Query: 522 SIEHALLHCALAKNIW--FNYNIISENIT 548
+ +H C + +W ++S++ T
Sbjct: 417 TRDHLFFTCPYSAEVWSTLTRKLLSQHFT 445
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 188/449 (41%), Gaps = 35/449 (7%)
Query: 124 ISHLLFADDCIIFGKNTIDNIHILKKILQDFCDSSGQMINYAKSNIFYSKNSHPKFKRLI 183
I+HL FADD ++F +I + +I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 184 MRTLKVKYASASEKYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQAGRTVVISA 243
+ + + +YLG L T + ++E I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 244 IAAAVPRYQMQCFAIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGL 300
+ ++ + M F +P K I ++ +F W + K AWS +CTPK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 HLPDLDNTALLSKMAWRLKTEPEAIWVKLLKAKYFPHSN--TPGPAKSHHSWNWKTIRKH 358
N L K+ WR+ + ++WV+ L+ + + + SW WK I KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 359 YSLLDDLSTWEVQSGNDINIWTDNW--IPEINGTIQNNNQSDL-----TKVAQLISNNNW 411
+L ++ +G++ + W DNW I + + D+ VA+ + N+
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 412 NNEVLSANFDVNTQNLIKTIPVN--SEGKDQLKWKLTKSGKFTVASMYQHLSNNNNNYNP 469
+ + +++I + + G+D ++WK +++ N +
Sbjct: 306 RRH--RHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGN-------GDIFKPCFNTKETWAA 356
Query: 470 NNH-----NW-NFIWSLPTVPRIKMFIWKICTKALPVRERIGKY-IDNNTTCPNCTS-IE 521
NW +W P+ + W L +R+ + +++C C +E
Sbjct: 357 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVE 416
Query: 522 SIEHALLHCALAKNIW--FNYNIISENIT 548
+ +H C + +W ++S++ T
Sbjct: 417 TRDHLFFTCPYSAEVWSTLTRKLLSQHFT 445
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 7/265 (2%)
Query: 124 ISHLLFADDCIIFGKNTIDNIHILKKILQDFCDSSGQMINYAKSNIFYSKNSHPKFKRLI 183
I+HL FADD ++F +I + +I F D SG I+ KS I Y K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 184 MRTLKVKYASASEKYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQAGRTVVISA 243
+ + + +YLG L T + ++E I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 244 IAAAVPRYQMQCFAIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLGL 300
+ ++ + M F +P K I ++ +F W + K AWS +CTPK GGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 HLPDLDNTALLSKMAWRLKTEPEAIWVKLLKAKYFPHSN--TPGPAKSHHSWNWKTIRKH 358
N L K+ WR+ + ++WV+ L+ + + + SW WK I KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 359 YSLLDDLSTWEVQSGNDINIWTDNW 383
+L ++ +G++ + W DNW
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 161/390 (41%), Gaps = 34/390 (8%)
Query: 183 IMRTLKVKYASASEKYLGAQLFIGAQKTKVFKDILEHIKNKLNKWNHSFLSQAGRTVVIS 242
I+ + + +YLG L T + ++E I+ ++ KW LS AGR +IS
Sbjct: 12 ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLIS 71
Query: 243 AIAAAVPRYQMQCFAIPKGISKSIKAVQRNFWWGKSKGICTK---AWSYICTPKKLGGLG 299
++ ++ + M F +P K I ++ +F W + K AWS +CTPK GGLG
Sbjct: 72 SVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLG 131
Query: 300 LHLPDLDNTALLSKMAWRLKTEPEAIWVKLLKAKYFPHSN--TPGPAKSHHSWNWKTIRK 357
+ N L K+ WR+ + ++WV+ L+ + + + SW WK I K
Sbjct: 132 IRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 190
Query: 358 HYSLLDDLSTWEVQSGNDINIWTDNW--IPEINGTIQNNNQSDL-----TKVAQLISNNN 410
H +L ++ +G++ + W DNW I + + D+ VA+ + N+
Sbjct: 191 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR 250
Query: 411 WNNEVLSANFDVNTQNLIKTIPVN--SEGKDQLKWKLTKSGKFTVASMYQHLSNNNNNYN 468
+ + +++I + + G+D ++WK +++ N +
Sbjct: 251 PRRH--RHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGN-------GDIFKPCFNTKETWA 301
Query: 469 PNNH-----NW-NFIWSLPTVPRIKMFIWKICTKALPVRERIGKY-IDNNTTCPNCTS-I 520
NW +W P+ + W L +R+ + +++C C +
Sbjct: 302 ATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLV 361
Query: 521 ESIEHALLHCALAKNIW--FNYNIISENIT 548
E+ +H C + +W ++S++ T
Sbjct: 362 ETRDHLFFTCPYSAEVWSTLTRKLLSQHFT 391