BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1970.1
(173 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 59 9e-11
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 58 2e-10
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 59 2e-10
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 58 4e-10
AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 56 6e-10
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 59.3 bits (142), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 13 KWQPPPQNFIKVNVDASFTNITSNVGISLIVHDAESKFIEAKVKSTRAR-NSEEGEAMAI 71
KW PP ++ +K N DAS + G+ I+ +++ IE + + R +EE E +
Sbjct: 104 KWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTL 163
Query: 72 LLGLEWAKTNQLKNIIVESDNINLIKHLHNKHHMIHWQSLIHIRRIRESRKEFEVVKFKY 131
+ ++ + K +I E DN + + ++ K Q + I+ FE ++F +
Sbjct: 164 IWAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDT--IQSWIPSFESIEFSF 221
Query: 132 IKRELNSSADKLAKWARKKNASKEWKNVPCILVNKYCNN 170
RE N AD LAK A K+N + ++ Y NN
Sbjct: 222 KHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSPYVNN 260
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 7 KHTSSEKWQPPPQNFIKVNVDASFTNITSNVGISLIVHDAESKF-IEAKVKSTRARNSEE 65
+ ++ +KW+ PP +IK N D SF T ++ D + + A+ N+ E
Sbjct: 56 RESTHQKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALE 115
Query: 66 GEAMAILLGLEWAKTNQLKNIIVESDNINLIKHLHNKHHMIHWQSLIHIRRIRESRKEFE 125
E A+++ ++ + + +I E D+ + + L+ K +H+ + IR K FE
Sbjct: 116 SELQALVMAMQHTWSQGYRKVIFEGDSKQVEELLNRKQ--MHFGAFNWIREAWSWSKRFE 173
Query: 126 VVKFKYIKRELNSSADKLAK 145
V F + R N AD LAK
Sbjct: 174 EVIFSWTPRTNNQPADMLAK 193
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 13 KWQPPPQNFIKVNVDASFTNITSNVGISLIVHDAESKFI-EAKVKSTRARNSEEGEAMAI 71
KWQ PP +IK N D +F + T N ++ D ++ + + +S E E A+
Sbjct: 185 KWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQAL 244
Query: 72 LLGLEWAKTNQLKNIIVESDNINLIKHLHNKHHMIHWQSLIHIRRIRESRKEFEVVKFKY 131
++ ++ A + + +I E D+ + + ++N+ +++ IR R +K FE FK+
Sbjct: 245 IIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGRFWQKRFEEAVFKW 302
Query: 132 IKRELNSSADKLAK 145
+ R N AD LAK
Sbjct: 303 VPRTNNQPADILAK 316
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 3 QEKIKHTSSEKWQPPPQNFIKVNVDASFTNITSNVGISLIVHDAESKFIEAKVKSTRARN 62
+ ++ +S +W+PPP ++K N DA++ GI ++ + + E K RA
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKG---EVKWMGARALP 465
Query: 63 SEEGEAMAILLGLEWAKTN----QLKNIIVESDNINLIKHLHNKHHMIHWQSL-IHIRRI 117
+ A L + WA + Q +I ESD+ LI+ L+N W SL I+ +
Sbjct: 466 KLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDL 522
Query: 118 RESRKEFEVVKFKYIKRELNSSADKLAK 145
+ +F VKF +I RE N+ A+++A+
Sbjct: 523 QRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:8344629-8345204 FORWARD
LENGTH=191 | 201606
Length = 191
Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 1 MKQEKIKHTSSEKWQPPPQNFIKVNVDASFTNITSNVGISLIVHDAESKFIEAKVKSTRA 60
+K + K + ++KWQ P ++K N D S + G+ I+ +++ ++ +
Sbjct: 17 VKGGQTKSSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQG 76
Query: 61 RNS-EEGEAMAILLGLEWAKTNQLKNIIVESDNINLIKHLHNKHHMIHWQSLIHIRRIRE 119
R + +E E A++ ++ A + + E DNI + + + NK + + I++
Sbjct: 77 RQTIKEAECTALIWAIQCAWDLGYRRVEFEGDNITVNRLIRNKETNPRLRYYLEF--IQQ 134
Query: 120 SRKEFEVVKFKYIKRELNSSADKLAK 145
K F VKF + RE N D LAK
Sbjct: 135 WSKAFTTVKFTFRHREQNVCVDVLAK 160