BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1980.1
(348 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 109 3e-26
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 94 8e-21
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 94 1e-20
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 94 1e-20
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 91 1e-19
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 109 bits (273), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 25/284 (8%)
Query: 66 AVPRYQMQCFAIPKGICNSIESLQRTFWW---GKSKTFHTINWSAICKPRKLGGLGLRLP 122
A+P Y M CF +PK +C I S+ FWW ++K H W + + GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 123 LLDNQAFLNKLNWRLLNSPHAIWVQVFKAKYFPKSHKPSPPKANH-SWPWKAISKQFSQM 181
N A L K WR+L+ P ++ +VFK++YF KS + P + S+ WK+I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 182 DGLVFWDINKGTHISIWHDFWIPNHP----------PPITNQSNSSLNWVAQLI--TNNT 229
+ G I IW W+ + P PP S SS+ V+ LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 230 WNTDLLNNCFDSDICSAILSINLQTDQ-EDTAKWTLTKAGNFSIKSMYNYL------RTG 282
W D++ F I + + D+ W T +G++++KS Y L R+
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 283 SNGPMHDSNDWFF--IWNLNTIPRIKLFLWKCCTNSLPVKDKIG 324
S + + IW T P+I+ FLWKC +NSLPV +
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALA 285
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 22/324 (6%)
Query: 16 KYLGTNLFIDRNKNKAFKSLLTQIKNKLSKWQTNLLSQAGRSIVVSTIAAAVPRYQMQCF 75
+YLG L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 76 AIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPRKLGGLGLRLPLLDNQAFLNK 132
+P I+S+ +F W + + WS +C P+ GGLG+R N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 133 LNWRLLNSPHAIWVQVFKAKYFPKSH--KPSPPKANHSWPWKAISKQFSQMDGLVFWDIN 190
L WR+L+S ++WVQ + K S SW WK I K + G V DI+
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 191 KGTHISIWHDFW--------IPNHPPPITNQSNSSLNWVAQLITNNTWNTDLLNNCFDSD 242
G++ S W D W + H I + + VA+ + N+ + +
Sbjct: 205 NGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHRPRRHRHDTLLRIE 263
Query: 243 ICSAILSINLQTDQEDTAKWTLTKAGNFSI-KSMYNYLRT--GSNGPMHDSNDWFFIWNL 299
A + T EDT +W GN I K +N T + P N + +W
Sbjct: 264 DVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFS 319
Query: 300 NTIPRIKLFLWKCCTNSLPVKDKI 323
+ P+ + W N L D++
Sbjct: 320 HATPKYSVLAWIAIKNRLTTGDRM 343
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 22/324 (6%)
Query: 16 KYLGTNLFIDRNKNKAFKSLLTQIKNKLSKWQTNLLSQAGRSIVVSTIAAAVPRYQMQCF 75
+YLG L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPRKLGGLGLRLPLLDNQAFLNK 132
+P I+S+ +F W + + WS +C P+ GGLG+R N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LNWRLLNSPHAIWVQVFKAKYFPKSH--KPSPPKANHSWPWKAISKQFSQMDGLVFWDIN 190
L WR+L+S ++WVQ + K S SW WK I K + G V DI+
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 191 KGTHISIWHDFW--------IPNHPPPITNQSNSSLNWVAQLITNNTWNTDLLNNCFDSD 242
G++ S W D W + H I + + VA+ + N+ + +
Sbjct: 259 NGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHRPRRHRHDTLLRIE 317
Query: 243 ICSAILSINLQTDQEDTAKWTLTKAGNFSI-KSMYNYLRT--GSNGPMHDSNDWFFIWNL 299
A + T EDT +W GN I K +N T + P N + +W
Sbjct: 318 DVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFS 373
Query: 300 NTIPRIKLFLWKCCTNSLPVKDKI 323
+ P+ + W N L D++
Sbjct: 374 HATPKYSVLAWIAIKNRLTTGDRM 397
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 22/324 (6%)
Query: 16 KYLGTNLFIDRNKNKAFKSLLTQIKNKLSKWQTNLLSQAGRSIVVSTIAAAVPRYQMQCF 75
+YLG L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPRKLGGLGLRLPLLDNQAFLNK 132
+P I+S+ +F W + + WS +C P+ GGLG+R N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LNWRLLNSPHAIWVQVFKAKYFPKSH--KPSPPKANHSWPWKAISKQFSQMDGLVFWDIN 190
L WR+L+S ++WVQ + K S SW WK I K + G V DI+
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 191 KGTHISIWHDFW--------IPNHPPPITNQSNSSLNWVAQLITNNTWNTDLLNNCFDSD 242
G++ S W D W + H I + + VA+ + N+ + +
Sbjct: 259 NGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHRPRRHRHDTLLRIE 317
Query: 243 ICSAILSINLQTDQEDTAKWTLTKAGNFSI-KSMYNYLRT--GSNGPMHDSNDWFFIWNL 299
A + T EDT +W GN I K +N T + P N + +W
Sbjct: 318 DVIAEVRHQGLTSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFS 373
Query: 300 NTIPRIKLFLWKCCTNSLPVKDKI 323
+ P+ + W N L D++
Sbjct: 374 HATPKYSVLAWIAIKNRLTTGDRM 397
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 24/325 (7%)
Query: 16 KYLGTNLFIDRNKNKAFKSLLTQIKNKLSKWQTNLLSQAGRSIVVSTIAAAVPRYQMQCF 75
+YLG L + + L+ +I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 76 AIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPRKLGGLGLRLPLLDNQAFLNK 132
+P I+S+ +F W + + WS +C P+ GGLG+R N+ L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 133 LNWRLLNSPHAIWVQVFKAKYFPKSH--KPSPPKANHSWPWKAISKQFSQMDGLVFWDIN 190
L WR+L+S ++WVQ + K S SW WK I K + G V DI+
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 191 KGTHISIWHDFW--------IPNHPPPITNQSNSSLNWVAQLITNNTWNTDLLNNCFD-S 241
G++ S W D W + H I + + VA+ + N+ +
Sbjct: 259 NGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHRPRRHRHDTLLRIE 317
Query: 242 DICSAILSINLQTDQEDTAKWTLTKAGNFSI-KSMYNYLRT--GSNGPMHDSNDWFFIWN 298
D+ + + L T EDT +W GN I K +N T + P N + +W
Sbjct: 318 DVIAEVRHQGL-TSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWF 372
Query: 299 LNTIPRIKLFLWKCCTNSLPVKDKI 323
+ P+ + W N L D++
Sbjct: 373 SHATPKYSVLAWIAIKNRLTTGDRM 397