BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2010.1
(518 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 236 7e-68
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 236 7e-68
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 101 7e-25
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 93 4e-21
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 236 bits (603), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 156/222 (70%), Gaps = 12/222 (5%)
Query: 298 RDRRPPTHLADYDCNNISLPYSNSRSNTPYPLTDSLSVAPFSKDHKIFLTSVLSHKEPTS 357
R R P +L DY C++++ S T + ++ LS S + FL + KEP++
Sbjct: 36 RRTRKPAYLQDYYCHSVA-------SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPST 88
Query: 358 FKEAMTSPHWREAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNANGSIERYKA 417
+ EA W AM EI A+E+ +TW + LP KKPIGCKWVYKIK+N++G+IERYKA
Sbjct: 89 YNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKA 148
Query: 418 RLVAKGYTQVEALDYTDTFVPVAKLVTVRVLLSIAAVKGWSLHQLDVNNAFLQGDLDEEV 477
RLVAKGYTQ E +D+ +TF PV KL +V+++L+I+A+ ++LHQLD++NAFL GDLDEE+
Sbjct: 149 RLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEI 208
Query: 478 FMKLPPGFST-QGET----RVCRLKKSLYGLKQASRQWFSKF 514
+MKLPPG++ QG++ VC LKKS+YGLKQASRQWF KF
Sbjct: 209 YMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKF 250
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 236 bits (603), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 156/222 (70%), Gaps = 12/222 (5%)
Query: 298 RDRRPPTHLADYDCNNISLPYSNSRSNTPYPLTDSLSVAPFSKDHKIFLTSVLSHKEPTS 357
R R P +L DY C++++ S T + ++ LS S + FL + KEP++
Sbjct: 36 RRTRKPAYLQDYYCHSVA-------SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPST 88
Query: 358 FKEAMTSPHWREAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNANGSIERYKA 417
+ EA W AM EI A+E+ +TW + LP KKPIGCKWVYKIK+N++G+IERYKA
Sbjct: 89 YNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKA 148
Query: 418 RLVAKGYTQVEALDYTDTFVPVAKLVTVRVLLSIAAVKGWSLHQLDVNNAFLQGDLDEEV 477
RLVAKGYTQ E +D+ +TF PV KL +V+++L+I+A+ ++LHQLD++NAFL GDLDEE+
Sbjct: 149 RLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEI 208
Query: 478 FMKLPPGFST-QGET----RVCRLKKSLYGLKQASRQWFSKF 514
+MKLPPG++ QG++ VC LKKS+YGLKQASRQWF KF
Sbjct: 209 YMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKF 250
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 101 bits (252), Expect = 7e-25, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 66/100 (66%)
Query: 353 KEPTSFKEAMTSPHWREAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNANGSI 412
KEP S A+ P W +AM E+ AL N TW L PV + +GCKWV+K K +++G++
Sbjct: 26 KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL 85
Query: 413 ERYKARLVAKGYTQVEALDYTDTFVPVAKLVTVRVLLSIA 452
+R KARLVAKG+ Q E + + +T+ PV + T+R +L++A
Sbjct: 86 DRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 92.8 bits (229), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 24 DIHHSDSPTTILITPLLSG-DNYASWSRGMRMALRAIDKFEFVDGSISKPTTPFE--SHA 80
DIHH P+ I L DNY +W R LR KF F+DG++ KP PF
Sbjct: 23 DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPD-PFSPLYQP 78
Query: 81 WERCNDLVSSWLVNLVSPDLRQSILYDESAAEIWTNLYDIFHQTNAPKIFQLKRAISSMK 140
WE+CN +V WL+N ++ L +S++Y E+A ++W +L +F KI+QL+R +++++
Sbjct: 79 WEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLR 138
Query: 141 QDGFDVSTYFTNL 153
Q G V YF L
Sbjct: 139 QGGDSVEEYFGKL 151