BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2020.1
(666 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 79 3e-15
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 70 4e-12
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 60 1e-10
AT1G40390.1 | DNAse I-like superfamily protein | Chr1:15432576-1... 59 9e-09
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 410 MTNRLKRILPDFISPFQAAYVLGRQIIDNVIISQELIHSFKKIKGPKSYFGLKLDMSKAF 469
M RLK ++ + I P QA+++ GR DN++ QE +HS ++ KG K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 470 DRVEWNFLVEIMQLMGFSTT-LINLINTCLSTSSMAVLI-----NDRPRLTFDVSRGIRQ 523
DR+ W++L + + GF L + + +A + + RPR++ D G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVS-DHRWGFRY 119
Query: 524 GDTLSPF 530
D +PF
Sbjct: 120 DDMAAPF 126
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 51/362 (14%)
Query: 96 LHDIGFSGYPYTWSNKQFKGNLIQERLDRALLNHKWLTIFPQSKVTHLPTLGSDHNPIIL 155
L DI G YTWSN Q N I +LDRA+ N W + FP + + SDH+P I+
Sbjct: 261 LVDIPSRGVHYTWSNHQ-DDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCII 319
Query: 156 TTKKNSSLGRRPFKFIRTWMSHSDCAPFINNNW---IKSPNHIQTKLNSL--AIKLSKW- 209
+ ++ F++ +H + W I +H+ + L A K K
Sbjct: 320 ILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLL 379
Query: 210 NKEVFGHLDNNIKLLTNRIQS------TRDPDSFKEI----FTQIETLLLQQESLWKEKS 259
N++ FG++ + K + ++S T DS + + ES +++KS
Sbjct: 380 NRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKS 439
Query: 260 RVSNVNLGDRNTQFFHAKAITRNRKNQIHSIKREDNTWTDDESEISTILANHIRNI---- 315
R+ + GD NT+FFH + KN I ++ +D+ ++ +++ ++ + ++
Sbjct: 440 RIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSD 499
Query: 316 STTTGSDLSTNIKECFSPQISSDQNDSLTMIPP--------------------------L 349
S D IK+ + + L+ +P
Sbjct: 500 SDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFF 559
Query: 350 WRR----SEDIVLMVTQFFTSAILPPLSSHTHICLLPKTKTPQSPADYRPINLLNTTYKI 405
W + + V +FF + L + T I L+PK + +RP++ YKI
Sbjct: 560 WESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKI 619
Query: 406 IT 407
IT
Sbjct: 620 IT 621
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 60.1 bits (144), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 506 LINDRPRLTFDVSRGIRQGDTLSPFLFAITMEGLSRLLEKRNNQQSFIGFPIPNSDLVIN 565
+IN P+ SRG+RQGD LSP+LF + E LS L + Q G + N+ IN
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 566 HLLFADD 572
HLLFADD
Sbjct: 73 HLLFADD 79
>AT1G40390.1 | DNAse I-like superfamily protein |
Chr1:15432576-15434674 REVERSE LENGTH=426 | 201606
Length = 426
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 35 RLSHHTPDHDNPWLVIGDLNCIXXXXXXXXXXXXXXXXXXXXXXXXNSHILNCKQAINGL 94
RLS +P ++PWLV+GD N I + + + +
Sbjct: 110 RLSASSPLCNSPWLVVGDFNQIASVTEHYSLMPSNISLQG---------LEDLQACMRDS 160
Query: 95 GLHDIGFSGYPYTWSNKQFKGNLIQERLDRALLNHKWLTIFPQSKVTHLPTLGSDHNPII 154
L D+ G YTWSN Q + N I +LDRA++N WL FP + P SDH +
Sbjct: 161 DLVDLPCRGVLYTWSNHQ-QDNPILRKLDRAIVNGCWLATFPTASAIFDPPSDSDHAACM 219
Query: 155 LTTKKNSSLG-RRPFKFIRTWMSHSDCAPFINNNWIK 190
+ + L ++ FK+ +H D I W K
Sbjct: 220 VILNNSPPLSKKKSFKYFSFLSTHPDFISSILAAWQK 256