BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2150.1
(109 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 63 2e-12
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 63 2e-12
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 56 2e-10
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 44 1e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 62.8 bits (151), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 6 YANAVGSIMYVMVCTRPDNSLVVSVVSRYMGRPERGHWQDVKWILRYLGGTAELGLVYDR 65
Y +G +MY+ + TR D S V+ +S++ P H Q V IL Y+ GT GL Y
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 66 RADTSYSVVGFVDLDFSGDLDRKRSLTGYTFTLCGSVISWRA 107
+A+ V F D F D +RS GY L S+ISW++
Sbjct: 437 QAEMQLQV--FSDASFQSCKDTRRSTNGYCMFLGTSLISWKS 476
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 62.8 bits (151), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 6 YANAVGSIMYVMVCTRPDNSLVVSVVSRYMGRPERGHWQDVKWILRYLGGTAELGLVYDR 65
Y +G +MY+ + TR D S V+ +S++ P H Q V IL Y+ GT GL Y
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 66 RADTSYSVVGFVDLDFSGDLDRKRSLTGYTFTLCGSVISWRA 107
+A+ V F D F D +RS GY L S+ISW++
Sbjct: 437 QAEMQLQV--FSDASFQSCKDTRRSTNGYCMFLGTSLISWKS 476
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 56.2 bits (134), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 6 YANAVGSIMYVMVCTRPDNSLVVSVVSRYMGRPERGHWQDVKWILRYLGGTAELGLVYDR 65
+ + VG++ Y+ + TRPD S V++V + M P + +K +LRY+ GT GL +
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 158
Query: 66 RADTSYSVVGFVDLDFSGDLDRKRSLTGYTFTLCGSVISWRA 107
++ +V F D D++G +RS TG+ L ++ISW A
Sbjct: 159 --NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSA 198
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 14 MYVMVCTRPDNSLVVSVVSRYMGRPERGHWQDVKWILRYLGGTAELGLVYDRRADTSYSV 73
MY+ + TRPD + V+ +S++ Q V +L Y+ GT GL Y +D +
Sbjct: 1 MYLTI-TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSD--LQL 57
Query: 74 VGFVDLDFSGDLDRKRSLTGYTFTLCGSVISW 105
F D D++ D +RS+TG+ C V W
Sbjct: 58 KAFADSDWASCPDTRRSVTGF----CSLVPLW 85