BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000108.1_g2190.1
         (387 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...   103   1e-26
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like...    76   1e-16

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score =  103 bits (258), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MKGLKRNGLYVLQGNTVTGSVAVSSPEKEVETTKLWHMWLGHMSERGMAILRKQGLLCRQ 60
           +KG + + LY+LQG+  TG   ++   K+   T+LWH  L HMS+RGM +L K+G L   
Sbjct: 39  LKGNRHDSLYILQGSVETGESNLAETAKD--ETRLWHSRLAHMSQRGMELLVKKGFLDSS 96

Query: 61  KVGKLEFWEHCIFGKQCRVKFSKTVHTTKGTLDYIHSDLWGPSRV 105
           KV  L+F E CI+GK  RV FS   HTTK  LDY+HSDLWG   V
Sbjct: 97  KVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSV 141


>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
           superfamily protein | ChrM:207553-207915 REVERSE
           LENGTH=120 | 201606
          Length = 120

 Score = 75.9 bits (185), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 47/82 (57%)

Query: 151 EQTLFERARCMLSNAGLPKAFWAKAVNTAAYLVNISPCTSIECKTLNEVWSGYPAKYENL 210
            +T+ E+ R ML   GLPK F A A NTA +++N  P T+I     +EVW      Y  L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 211 RIFGCPAYAHVKEGELDRRAKK 232
           R FGC AY H  EG+L  RAKK
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKK 83

Top