BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2300.1
(135 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-12
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 3e-12
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 52 1e-08
AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486 RE... 52 2e-08
AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675 RE... 52 2e-08
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 62.4 bits (150), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 28 ATNNETEYEALIAGMNLTKDIGVQKLAIKSDSQLVVNQLQGTYQAKDMKMAAYVSHVKEL 87
ATNN EY AL+ G+ D G + + + DS LV Q+QG ++ KMA KEL
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QSQFTEVSFEQVPRLENGHADVLANLGSSILTQDAQT 124
+ F + + R +N AD AN S+I D QT
Sbjct: 254 MNSFKTFDIKHIAREKNSEADKQAN--SAIFLADGQT 288
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 62.4 bits (150), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 28 ATNNETEYEALIAGMNLTKDIGVQKLAIKSDSQLVVNQLQGTYQAKDMKMAAYVSHVKEL 87
ATNN EY AL+ G+ D G + + + DS LV Q+QG ++ KMA KEL
Sbjct: 194 ATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKEL 253
Query: 88 QSQFTEVSFEQVPRLENGHADVLANLGSSILTQDAQT 124
+ F + + R +N AD AN S+I D QT
Sbjct: 254 MNSFKTFDIKHIAREKNSEADKQAN--SAIFLADGQT 288
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 5 GLGVVLTSPEGDLIQQAIRCGFK-ATNNETEYEALIAGMNLTKDIGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY ALI G+ + G + + +K DS+LV
Sbjct: 233 GAAAVLKTEDGSLICR-VRQGLGIATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVC 291
Query: 64 NQLQGTYQAKDMKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADVLANLG 114
Q++G ++ +A K L ++ V R N AD ANL
Sbjct: 292 MQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLA 342
>AT5G51080.3 | RNase H family protein | Chr5:20769022-20770486
REVERSE LENGTH=259 | 201606
Length = 259
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 5 GLGVVLTSPEGDLIQQAIRCGFK-ATNNETEYEALIAGMNLTKDIGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY LI G+ + G K+ +K+DS+LV
Sbjct: 139 GAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVC 197
Query: 64 NQLQGTYQAKDMKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADVLANLGSSI 117
Q++G ++ ++ K+L + V R N AD AN+ + +
Sbjct: 198 MQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARL 251
>AT5G51080.2 | RNase H family protein | Chr5:20769022-20770675
REVERSE LENGTH=322 | 201606
Length = 322
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 5 GLGVVLTSPEGDLIQQAIRCGFK-ATNNETEYEALIAGMNLTKDIGVQKLAIKSDSQLVV 63
G VL + +G LI + +R G ATNN EY LI G+ + G K+ +K+DS+LV
Sbjct: 202 GAAAVLKTEDGSLIFK-MRQGLGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVC 260
Query: 64 NQLQGTYQAKDMKMAAYVSHVKELQSQFTEVSFEQVPRLENGHADVLANLGSSI 117
Q++G ++ ++ K+L + V R N AD AN+ + +
Sbjct: 261 MQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARL 314