BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2350.1
(768 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 113 8e-29
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 113 bits (282), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 49 HLRKVLIVLQENELHLNLKKCTFLKPSLIFLGF--VISSEGIHVDNEKVQAIQEWPTPKT 106
HL VL + ++++ + N KKC F +P + +LG +IS EG+ D K++A+ WP PK
Sbjct: 3 HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62
Query: 107 VTEVRSFYGLATFYRRFIRDFSTIMAPITECMKKGKFEWGIEADKAFSIIKQKLCNAPVL 166
TE+R F GL +YRRF++++ I+ P+TE +KK +W A AF +K + PVL
Sbjct: 63 TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122
Query: 167 ALPNFDKPF 175
ALP+ PF
Sbjct: 123 ALPDLKLPF 131