BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2390.1
(752 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 440 e-140
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 440 e-140
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 178 5e-51
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 102 5e-25
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 61 5e-11
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 440 bits (1132), Expect = e-140, Method: Compositional matrix adjust.
Identities = 220/546 (40%), Positives = 338/546 (61%), Gaps = 17/546 (3%)
Query: 169 PNQSVVEDVPEAPSKPPRKILPSRQTRGIPKPTYEPE-----LSSRVKYHMSQYVSDHRL 223
P+ ++ DVPE P R+TR KP Y + ++S + +SQ++S ++
Sbjct: 18 PSANIQNDVPE-----PSVHTSHRRTR---KPAYLQDYYCHSVASLTIHDISQFLSYEKV 69
Query: 224 SESNKSFVNQLSTVYIPNNVREALSDSKWKATMNEEMKSLQKNDTWELVDRPKDKNPVGC 283
S SF+ ++ P+ EA W M++E+ +++ TWE+ P +K P+GC
Sbjct: 70 SPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 284 RWIYSVKYKADGTIERYKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLDWQ 343
+W+Y +KY +DGTIERYKARLVAKGYTQ G+D+ ETF+PV K+ +V+++L+++A ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFT 189
Query: 344 LQQFDVKNAFLHGELLEEVYMDLPPGCKIPQ---IHNQKVCRLKKSLYGLKQSPRAWFGR 400
L Q D+ NAFL+G+L EE+YM LPPG Q + VC LKKS+YGLKQ+ R WF +
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249
Query: 401 FTKGMKEFGYHQSNCDHNLFTKRQKGKLTALIVYVDDMVVTGDDPEERKALQNYLSKEFE 460
F+ + FG+ QS+ DH F K ++VYVDD+++ ++ L++ L F+
Sbjct: 250 FSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFK 309
Query: 461 MKDLGPLKYFLGIEVSRSSNEIFLSQRKYTLDLLHEVGMSACEPIDTPVEEGLKLSVEPN 520
++DLGPLKYFLG+E++RS+ I + QRKY LDLL E G+ C+P P++ + S
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369
Query: 521 QISVDKGRYQRLVGRLMYLAHTRPDLAYALSIVSQFMHNPGEKHMNAVLCILRYLKAAPG 580
VD Y+RL+GRLMYL TR D+++A++ +SQF P H AV+ IL Y+K G
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429
Query: 581 KGILFTKNSSCRTIDVYTDADWVGEVNGRRSTAGYFTFVGGNLVTWRSKKQNVVARSSAE 640
+G+ ++ + + + V++DA + + RRST GY F+G +L++W+SKKQ VV++SSAE
Sbjct: 430 QGLFYSSQAEMQ-LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 641 SEFRGMADGICEALWLRLLLDDLGYPSERPIQLYCDNKAACDIAHNPVQHDRTKHVEVDR 700
+E+R ++ E +WL +L P +P L+CDN AA IA N V H+RTKH+E D
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 701 CFIKEK 706
++E+
Sbjct: 549 HSVRER 554
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 440 bits (1132), Expect = e-140, Method: Compositional matrix adjust.
Identities = 220/546 (40%), Positives = 338/546 (61%), Gaps = 17/546 (3%)
Query: 169 PNQSVVEDVPEAPSKPPRKILPSRQTRGIPKPTYEPE-----LSSRVKYHMSQYVSDHRL 223
P+ ++ DVPE P R+TR KP Y + ++S + +SQ++S ++
Sbjct: 18 PSANIQNDVPE-----PSVHTSHRRTR---KPAYLQDYYCHSVASLTIHDISQFLSYEKV 69
Query: 224 SESNKSFVNQLSTVYIPNNVREALSDSKWKATMNEEMKSLQKNDTWELVDRPKDKNPVGC 283
S SF+ ++ P+ EA W M++E+ +++ TWE+ P +K P+GC
Sbjct: 70 SPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGC 129
Query: 284 RWIYSVKYKADGTIERYKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLDWQ 343
+W+Y +KY +DGTIERYKARLVAKGYTQ G+D+ ETF+PV K+ +V+++L+++A ++
Sbjct: 130 KWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFT 189
Query: 344 LQQFDVKNAFLHGELLEEVYMDLPPGCKIPQ---IHNQKVCRLKKSLYGLKQSPRAWFGR 400
L Q D+ NAFL+G+L EE+YM LPPG Q + VC LKKS+YGLKQ+ R WF +
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249
Query: 401 FTKGMKEFGYHQSNCDHNLFTKRQKGKLTALIVYVDDMVVTGDDPEERKALQNYLSKEFE 460
F+ + FG+ QS+ DH F K ++VYVDD+++ ++ L++ L F+
Sbjct: 250 FSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFK 309
Query: 461 MKDLGPLKYFLGIEVSRSSNEIFLSQRKYTLDLLHEVGMSACEPIDTPVEEGLKLSVEPN 520
++DLGPLKYFLG+E++RS+ I + QRKY LDLL E G+ C+P P++ + S
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369
Query: 521 QISVDKGRYQRLVGRLMYLAHTRPDLAYALSIVSQFMHNPGEKHMNAVLCILRYLKAAPG 580
VD Y+RL+GRLMYL TR D+++A++ +SQF P H AV+ IL Y+K G
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429
Query: 581 KGILFTKNSSCRTIDVYTDADWVGEVNGRRSTAGYFTFVGGNLVTWRSKKQNVVARSSAE 640
+G+ ++ + + + V++DA + + RRST GY F+G +L++W+SKKQ VV++SSAE
Sbjct: 430 QGLFYSSQAEMQ-LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 641 SEFRGMADGICEALWLRLLLDDLGYPSERPIQLYCDNKAACDIAHNPVQHDRTKHVEVDR 700
+E+R ++ E +WL +L P +P L+CDN AA IA N V H+RTKH+E D
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 701 CFIKEK 706
++E+
Sbjct: 549 HSVRER 554
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 178 bits (452), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 133/225 (59%), Gaps = 2/225 (0%)
Query: 431 LIVYVDDMVVTGDDPEERKALQNYLSKEFEMKDLGPLKYFLGIEVSRSSNEIFLSQRKYT 490
L++YVDD+++TG L LS F MKDLGP+ YFLGI++ + +FLSQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 491 LDLLHEVGMSACEPIDTPVEEGLKLSVEPNQISVDKGRYQRLVGRLMYLAHTRPDLAYAL 550
+L+ GM C+P+ TP+ L SV + D ++ +VG L YL TRPD++YA+
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 551 SIVSQFMHNPGEKHMNAVLCILRYLKAAPGKGILFTKNSSCRTIDVYTDADWVGEVNGRR 610
+IV Q MH P + + +LRY+K G+ KNS + + D+DW G + RR
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN-VQAFCDSDWAGCTSTRR 180
Query: 611 STAGYFTFVGGNLVTWRSKKQNVVARSSAESEFRGMADGICEALW 655
ST G+ TF+G N+++W +K+Q V+RSS E+E+R +A E W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 102 bits (255), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 68/102 (66%)
Query: 240 PNNVREALSDSKWKATMNEEMKSLQKNDTWELVDRPKDKNPVGCRWIYSVKYKADGTIER 299
P +V AL D W M EE+ +L +N TW LV P ++N +GC+W++ K +DGT++R
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 300 YKARLVAKGYTQTYGVDYTETFAPVAKINTVRVLLSLAANLD 341
KARLVAKG+ Q G+ + ET++PV + T+R +L++A L+
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 60.8 bits (146), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 537 MYLAHTRPDLAYALSIVSQFMHNPGEKHMNAVLCILRYLKAAPGKGILFTKNSSCRTIDV 596
MYL TRPDL +A++ +SQF M AV +L Y+K G+G+ ++ S + +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQ-LKA 59
Query: 597 YTDADWVGEVNGRRSTAGYFTFV 619
+ D+DW + RRS G+ + V
Sbjct: 60 FADSDWASCPDTRRSVTGFCSLV 82