BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2450.1
(456 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 130 6e-36
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 130 bits (328), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 344 LEHVQLIFEVLRQHQFFVKLKKCEFGQQELEYLGH--IITSQGVKVDQSKIQAMCNWPKP 401
+ H+ ++ ++ QHQF+ KKC FGQ ++ YLGH II+ +GV D +K++AM WP+P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 402 TNVSELRWFLSLTGYYRKFVCNYGVIARPLTNLLKKGQFCWNEEADKAFESLKKS 456
N +ELR FL LTGYYR+FV NYG I RPLT LLKK W E A AF++LK +
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGA 115