BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2540.1
(145 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 59 5e-12
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase)
| ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 59.3 bits (142), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 14 LINGHPGPTFHPSRGIRQGDPLFPFLFILAME---GLCRILASNPDNGKFLGFPTNNPNL 70
+ING P PSRG+RQGDPL P+LFIL E GLCR + G+ G +N +
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCR---RAQEQGRLPGIRVSNNSP 69
Query: 71 TISHLLFAND 80
I+HLLFA+D
Sbjct: 70 RINHLLFADD 79