BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2560.1
(669 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 571 0.0
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 571 0.0
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 236 5e-73
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 107 2e-26
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 99 3e-24
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 571 bits (1471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 279/568 (49%), Positives = 383/568 (67%), Gaps = 12/568 (2%)
Query: 109 RLRRPPAHLDDYVCHSYPTSTVTYPLTNYLHFNQFSASHQVFLNSVISTVEPTSFSQAVK 168
R R PA+L DY CHS + T+ + ++ +L + + S + FL + EP+++++A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTI-HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKE 94
Query: 169 SPHWREAMEKEIAALEANQTWTITDLPSGKRTIGCKWVYKIKFKADGSIERYKARLVAKG 228
W AM+ EI A+E TW I LP K+ IGCKWVYKIK+ +DG+IERYKARLVAKG
Sbjct: 95 FLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKG 154
Query: 229 YTQIEGLDFHDTFAPVAKLVTVRVLLSIAAVKKWSLHQLDVNNAFFQGDLDEEVFMKLPP 288
YTQ EG+DF +TF+PV KL +V+++L+I+A+ ++LHQLD++NAF GDLDEE++MKLPP
Sbjct: 155 YTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPP 214
Query: 289 GFS-KQGES----KVCRLQKSLYGLKHASRQYFSKFSSVFIKKGFTQSLSDYSLFSLCTE 343
G++ +QG+S VC L+KS+YGLK ASRQ+F KFS I GF QS SD++ F T
Sbjct: 215 GYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA 274
Query: 344 SVHLYVLVYVDDIVITGNDEIAISQLKSFLHTTFSLKDLGPHKYFLGIEVSRSSQGIFLC 403
++ L VLVYVDDI+I N++ A+ +LKS L + F L+DLGP KYFLG+E++RS+ GI +C
Sbjct: 275 TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINIC 334
Query: 404 QRKYALDIITDSGLSACRPSQFPMEQKLRLSPSDGDPLPDPTIFRRLIGRLLYLTVTRPD 463
QRKYALD++ ++GL C+PS PM+ + S G D +RRLIGRL+YL +TR D
Sbjct: 335 QRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLD 394
Query: 464 ISYAVNNLSQFLQKPSTTHLDAAHRVLRYLKGSIGHGLLLSSTSSLHISRYCDSDWAGCP 523
IS+AVN LSQF + P H A ++L Y+KG++G GL SS + + + + D+ + C
Sbjct: 395 ISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCK 454
Query: 524 STRRSTTGYFTMLGSSPLSWKSKKQPTIAKSSAEAEYRALAHLTSELQWLKYLLRDLGID 583
TRRST GY LG+S +SWKSKKQ ++KSSAEAEYRAL+ T E+ WL R+L +
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514
Query: 584 HSSPMSVYCDNKAALHIADNPVFHERTKHIEIDCHFVREK-IKANVIAPRFTPTSEQLAD 642
S P ++CDN AA+HIA N VFHERTKHIE DCH VRE+ + ++ F EQ D
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--D 572
Query: 643 IFTK---PLGADAFKHIVGKLGITSLSA 667
FT+ P+ +IV G+ L A
Sbjct: 573 GFTEYLSPILRGTIMYIVSMFGLAGLEA 600
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 571 bits (1471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 279/568 (49%), Positives = 383/568 (67%), Gaps = 12/568 (2%)
Query: 109 RLRRPPAHLDDYVCHSYPTSTVTYPLTNYLHFNQFSASHQVFLNSVISTVEPTSFSQAVK 168
R R PA+L DY CHS + T+ + ++ +L + + S + FL + EP+++++A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTI-HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKE 94
Query: 169 SPHWREAMEKEIAALEANQTWTITDLPSGKRTIGCKWVYKIKFKADGSIERYKARLVAKG 228
W AM+ EI A+E TW I LP K+ IGCKWVYKIK+ +DG+IERYKARLVAKG
Sbjct: 95 FLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKG 154
Query: 229 YTQIEGLDFHDTFAPVAKLVTVRVLLSIAAVKKWSLHQLDVNNAFFQGDLDEEVFMKLPP 288
YTQ EG+DF +TF+PV KL +V+++L+I+A+ ++LHQLD++NAF GDLDEE++MKLPP
Sbjct: 155 YTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPP 214
Query: 289 GFS-KQGES----KVCRLQKSLYGLKHASRQYFSKFSSVFIKKGFTQSLSDYSLFSLCTE 343
G++ +QG+S VC L+KS+YGLK ASRQ+F KFS I GF QS SD++ F T
Sbjct: 215 GYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA 274
Query: 344 SVHLYVLVYVDDIVITGNDEIAISQLKSFLHTTFSLKDLGPHKYFLGIEVSRSSQGIFLC 403
++ L VLVYVDDI+I N++ A+ +LKS L + F L+DLGP KYFLG+E++RS+ GI +C
Sbjct: 275 TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINIC 334
Query: 404 QRKYALDIITDSGLSACRPSQFPMEQKLRLSPSDGDPLPDPTIFRRLIGRLLYLTVTRPD 463
QRKYALD++ ++GL C+PS PM+ + S G D +RRLIGRL+YL +TR D
Sbjct: 335 QRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLD 394
Query: 464 ISYAVNNLSQFLQKPSTTHLDAAHRVLRYLKGSIGHGLLLSSTSSLHISRYCDSDWAGCP 523
IS+AVN LSQF + P H A ++L Y+KG++G GL SS + + + + D+ + C
Sbjct: 395 ISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCK 454
Query: 524 STRRSTTGYFTMLGSSPLSWKSKKQPTIAKSSAEAEYRALAHLTSELQWLKYLLRDLGID 583
TRRST GY LG+S +SWKSKKQ ++KSSAEAEYRAL+ T E+ WL R+L +
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514
Query: 584 HSSPMSVYCDNKAALHIADNPVFHERTKHIEIDCHFVREK-IKANVIAPRFTPTSEQLAD 642
S P ++CDN AA+HIA N VFHERTKHIE DCH VRE+ + ++ F EQ D
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQ--D 572
Query: 643 IFTK---PLGADAFKHIVGKLGITSLSA 667
FT+ P+ +IV G+ L A
Sbjct: 573 GFTEYLSPILRGTIMYIVSMFGLAGLEA 600
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 236 bits (601), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 155/226 (68%), Gaps = 1/226 (0%)
Query: 347 LYVLVYVDDIVITGNDEIAISQLKSFLHTTFSLKDLGPHKYFLGIEVSRSSQGIFLCQRK 406
+Y+L+YVDDI++TG+ ++ L L +TFS+KDLGP YFLGI++ G+FL Q K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 407 YALDIITDSGLSACRPSQFPMEQKLRLSPSDGDPLPDPTIFRRLIGRLLYLTVTRPDISY 466
YA I+ ++G+ C+P P+ KL S S PDP+ FR ++G L YLT+TRPDISY
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAK-YPDPSDFRSIVGALQYLTLTRPDISY 119
Query: 467 AVNNLSQFLQKPSTTHLDAAHRVLRYLKGSIGHGLLLSSTSSLHISRYCDSDWAGCPSTR 526
AVN + Q + +P+ D RVLRY+KG+I HGL + S L++ +CDSDWAGC STR
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179
Query: 527 RSTTGYFTMLGSSPLSWKSKKQPTIAKSSAEAEYRALAHLTSELQW 572
RSTTG+ T LG + +SW +K+QPT+++SS E EYRALA +EL W
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 107 bits (266), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 141 NQFSASHQVFLNSVISTVEPTSFSQAVKSPHWREAMEKEIAALEANQTWTITDLPSGKRT 200
N+ + + + + + I EP S A+K P W +AM++E+ AL N+TW + P +
Sbjct: 10 NKLNPKYSLTITTTIKK-EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 201 IGCKWVYKIKFKADGSIERYKARLVAKGYTQIEGLDFHDTFAPVAKLVTVRVLLSIA 257
+GCKWV+K K +DG+++R KARLVAKG+ Q EG+ F +T++PV + T+R +L++A
Sbjct: 69 LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 98.6 bits (244), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%)
Query: 455 LYLTVTRPDISYAVNNLSQFLQKPSTTHLDAAHRVLRYLKGSIGHGLLLSSTSSLHISRY 514
+YLT+TRPD+++AVN LSQF T + A ++VL Y+KG++G GL S+TS L + +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 515 CDSDWAGCPSTRRSTTGYFTML 536
DSDWA CP TRRS TG+ +++
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82