BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2590.1
(139 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 66 3e-13
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 62 6e-13
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 52 2e-08
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 50 9e-08
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 50 1e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 65.9 bits (159), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW---EKSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQA 57
M CF LPK + K I ++ FWW +++K +H W + + GG+GF+ N A
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 FLRKLAWRMRKNPQAPWATLLKAKYFPNTINP--CPPKQFHYWLWKSIYKTHQQNPQLEL 115
L K WRM P++ A + K++YF + +P P ++WKSI+ + + Q
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKS-DPLNAPLGSRPSFVWKSIHASQEILRQGAR 126
Query: 116 LEGRKGTLINIWQDYWIPAHP 136
G I IW+ W+ + P
Sbjct: 127 AVVGNGEDIIIWRHKWLDSKP 147
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 62.4 bits (150), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW---EKSKAIHTIKWSSICLPRKL-GGLGFRLPHLNNQ 56
M CF L K + K + + FWW E + I + W +C ++ GGLGFR NQ
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 AFLRKLAWRMRKNPQAPWATLLKAKYFP-NTINPCPPKQFHYWLWKSIYKTHQQNPQLEL 115
A L K ++R+ P + LL+++YFP +++ C + W+SI + + L
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 LEGRKGTLINIWQDYWI-PAHPLP 138
G +W D WI PLP
Sbjct: 128 RTIGDGIHTKVWLDRWIMDETPLP 151
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 52.0 bits (123), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW---EKSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQA 57
M F LP K I+++ SF W E + + WS +C P+ GGLG R N+
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 FLRKLAWRMRKNPQ--APWATLL---KAKYFPNTINPCPPKQFHYWLWKSIYKTHQQNPQ 112
L KL WRM + W L K ++ + N W+WK I K
Sbjct: 196 SLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGN----TTLGSWMWKKILKHRALASG 251
Query: 113 LELLEGRKGTLINIWQDYW 131
+ G+ + W D W
Sbjct: 252 FVKHDIHNGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 50.1 bits (118), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW---EKSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQA 57
M F LP K I+++ SF W E + + WS +C P+ GGLG R N+
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 141
Query: 58 FLRKLAWRMRKNPQ--APWATLL---KAKYFPNTINPCPPKQFHYWLWKSIYKTHQQNPQ 112
L KL WRM + W L K ++ + N W+WK I K
Sbjct: 142 SLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASG 197
Query: 113 LELLEGRKGTLINIWQDYW 131
+ G+ + W D W
Sbjct: 198 FVKHDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW---EKSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQA 57
M F LP K I+++ SF W E + + WS +C P+ GGLG R N+
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 FLRKLAWRMRKNPQ--APWATLL---KAKYFPNTINPCPPKQFHYWLWKSIYKTHQQNPQ 112
L KL WRM + W L K ++ + N W+WK I K
Sbjct: 196 SLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASG 251
Query: 113 LELLEGRKGTLINIWQDYW 131
+ G+ + W D W
Sbjct: 252 FVKHDIHNGSNTSFWFDNW 270