BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2760.1
(278 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 81 3e-17
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 78 6e-16
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 68 6e-13
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 66 5e-12
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 65 8e-12
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.9 bits (198), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
Query: 1 MWKLINKGLPDLMSINRGNPSVDPTCILCANGPETAHHLFGTCSVFKELCQRASSFEQVP 60
+WKL++ L ++ R + P C C ET+ HLF C + + RAS
Sbjct: 31 LWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDC-FYAQQVWRASGIPHQE 89
Query: 61 QHTD------PEELVKEMILIKKEERRVAFIAYLMWEFWKSRNRKMFNNEQIDMEVIIHK 114
T EL+ L ++ + +++W WKSRN+ +F + I + + +
Sbjct: 90 LRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQR 149
Query: 115 AK----------LQVKGLTNNKHDEPQQEPVI---EWFPPPVGTQKINFDGAFS--DRGS 159
A+ V+ L H Q+P + +W PP K N+DGAF+ R +
Sbjct: 150 ARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNA 209
Query: 160 SIGVVIRDFQGSRIYASSKIIESQS-AIESEAIALVEALEMGNQRSEGSFIVEGDCR 215
G ++RD G + + I + S ++ESE AL+ A++ + I EGD +
Sbjct: 210 KAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSK 266
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 77.8 bits (190), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 19/239 (7%)
Query: 1 MWKLINKGLPDLMSINRGNPSVDPTCILCANGPETAHHLFGTCSVFKELCQRASSFEQVP 60
+W+ +++ L + +DP+C C E+ +H TC F + R S +
Sbjct: 175 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP-FATMAWRLSDSSLIR 233
Query: 61 QH---TDPEELVKEMILIKKEERRVAF----IAYLMWEFWKSRNRKMFNNEQIDMEVIIH 113
D EE + ++ ++ F +L+W WK+RN +FN + +
Sbjct: 234 NQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVL 293
Query: 114 KAKLQVKGLTN-----NKHDEPQQ---EPVIEWFPPPVGTQKINFDGAFSDRG--SSIGV 163
AK + N K P + E IEW PP K NFD F + ++ G
Sbjct: 294 SAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGW 353
Query: 164 VIRDFQGSRI-YASSKIIESQSAIESEAIALVEALEMGNQRSEGSFIVEGDCRVLIDSV 221
+IR+ G+ I + S K+ + + +E+E AL+ AL+ R +EGDC+ LI+ +
Sbjct: 354 IIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 412
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 20/265 (7%)
Query: 23 DPTCILCANGPETAHHLFGTCSVFKELCQRASSFEQVPQHTDPEELVKEMILIKKEERRV 82
+ +C+ C + ET +HL C F L S P+ + L + + E +
Sbjct: 9 EASCVRCPDSRETVNHLLFKC-CFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEI 67
Query: 83 A-------FIAYLMWEFWKSRNRKMFNNEQIDMEVIIHKAKLQVKGLTNNKHDE-----P 130
+ +L+W WKSRN MF ++ D ++ +A + + + E P
Sbjct: 68 PKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGP 127
Query: 131 QQEP--VIEWFPPPVGTQKINFDGAFS--DRGSSIGVVIRDFQGSRIYASSKII-ESQSA 185
Q E ++W PP K N D + + IG ++R+ G ++ ++ + +++
Sbjct: 128 QVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNV 187
Query: 186 IESEAIALVEALEMGNQRSEGSFIVEGDCRVLIDSVLDGQDDGPWRIGPYINRAKSLLNN 245
+E+E AL A+ ++ + I E D + L++ +L+ D P + P + + LL++
Sbjct: 188 LEAELEALRWAVLTMSRFNYKRIIFESDAQALVN-LLNSDDFWP-TLQPALEDIQQLLHH 245
Query: 246 QIIKALQHCPRRANEESHSTAHSTL 270
+ PR N+ + A ++
Sbjct: 246 FEEVKFEFTPRGGNKVADRIARESI 270
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 124/287 (43%), Gaps = 20/287 (6%)
Query: 1 MWKLINKGLPDLMSINRGNPSVDPTCILCANGPETAHHLFGTCSVFKELCQRASSFEQVP 60
+WK ++ LP ++ + S + CI C + ET +HL C+ F L SS
Sbjct: 270 LWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCT-FARLTWAISSIPIPL 328
Query: 61 QHTDPEELVKEMILI-------KKEERRVAFIAYLMWEFWKSRNRKMFNNEQIDMEVIIH 113
+ + + + + E+ + +L+W WK+RN +F + + + ++
Sbjct: 329 GGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLR 388
Query: 114 KA-----KLQVKGLTNNKHDEPQ--QEPVIEWFPPPVGTQKINFDGAFS--DRGSSIGVV 164
+A + +++ + +PQ + W PPP K N D ++ + IG V
Sbjct: 389 RAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWV 448
Query: 165 IRDFQGSRIYASSKII-ESQSAIESEAIALVEALEMGNQRSEGSFIVEGDCRVLIDSVLD 223
+R+ +G + ++ + + +S +E+E A+ A+ ++ I E D +VLI+ +L+
Sbjct: 449 LRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIE-ILN 507
Query: 224 GQDDGPWRIGPYINRAKSLLNNQIIKALQHCPRRANEESHSTAHSTL 270
+ P + P I + LL+ PR N + A +L
Sbjct: 508 NDEIWP-SLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVARESL 553
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 28/251 (11%)
Query: 1 MWKLINKGLPDLMSINRGNPSVDPTCILCANGPETAHHLFGTCSVFKELCQRASSF--EQ 58
+W+ + L + N DP C C ET HH+ C + + + A+ Q
Sbjct: 50 LWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQ 109
Query: 59 VPQHTDPEELVKEMILIKKEE------RRVAFIAYLMWEFWKSRNRKMFNN--EQIDMEV 110
+ E+ + +I + K + R + F ++MW WKSRN +F + D E
Sbjct: 110 WGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPF--WIMWRLWKSRNVFLFQQKCQSPDYEA 167
Query: 111 I--IHKAK--LQVKGLTNNKHDEPQQEPV-------IEWFPPPVGTQKINFDGAFSDRGS 159
I A L T N + P+ +W PPP G K NFD ++ +GS
Sbjct: 168 RKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYT-QGS 226
Query: 160 SI---GVVIRDFQGSRIY-ASSKIIESQSAIESEAIALVEALEMGNQRSEGSFIVEGDCR 215
G IR+ G + ++K+ S ++ +EA+ + AL++ E D +
Sbjct: 227 PYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSK 286
Query: 216 VLIDSVLDGQD 226
L+ + +G+D
Sbjct: 287 SLVTLINNGED 297