BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2790.1
(930 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 181 3e-48
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 123 4e-29
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 123 4e-29
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 121 9e-28
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 98 7e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 181 bits (460), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 146/556 (26%), Positives = 267/556 (48%), Gaps = 55/556 (9%)
Query: 395 AVPRYQMQCFALPKSVSKRIMTLQKSFWW---GKSKGICTKAWNSICLPKKEGGLGLHLP 451
A+P Y M CF LPK+V K+I+++ FWW ++KG+ KAW+ + K EGG+G
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 452 ELDNKAFLSKLAWRLRTEPNAAWVQLLKAKYYPNSD---RPGRVKPHNSWILKNINKYND 508
E N A L K WR+ + P + ++ K++Y+ SD P +P S++ K+I+ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRP--SFVWKSIHASQE 119
Query: 509 QVNDLSCWETHSGNDINIWTDKWI---PTFSS------PPQNSFN-SNLTKVSQLI--TN 556
+ + +G DI IW KW+ P ++ PPQ + S++ KVS LI +
Sbjct: 120 ILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESG 179
Query: 557 DTWNEHILIENFDENTRNMIKTI-PIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN----- 610
W + ++ F E R +I + P D W+ T+SG++T+KS Y+ L
Sbjct: 180 REWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 611 ---HNSDNPTNNHNWKFIWEIPSIPRIQLFIWKICTKALPVKNRIG-KFIGNDLLCPKC- 665
P+ N ++ IW+ + P+IQ F+WK + +LPV + + + + C +C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 666 AVPETMEHALLHCPMAKNIWFYFNV-------ISENISSIIDWIFTWQASSQNSYTASNH 718
+ ET+ H L C A+ W ++ +++I + W+F + + ++
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFN-LGNGNPQWEKASQ 358
Query: 719 HFTTILWNIWKMRCDNCFQHMISDPETVIK---------NIKSFPEKPIDKIKINPPKAT 769
+LW +WK R + F+ + + V++ I++ E K ++N
Sbjct: 359 LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCG 418
Query: 770 KWKPPKAPYIKINVDASFTSSADNAGIGVIVHNAAS--KFMGAFASMDRIRNSEEGEAIT 827
+W+PP ++K N DA++ + GIG ++ N K+MGA A + ++++ E E
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEA 477
Query: 828 ILKGLIWAEENKHNNIIIESDNINLINHLKDRRKAIHWFS-SFHIKKIREAMSRVGNVQL 886
+ ++ ++N +I ESD+ LI L + W S I+ ++ +S+ V+
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFTEVKF 534
Query: 887 SYTNRLLNDKADKLAK 902
+ R N A+++A+
Sbjct: 535 VFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 184/442 (41%), Gaps = 41/442 (9%)
Query: 270 LVLTHLLFADDCLIFGRNSLDNIANLKNLLRIFCDSSGQMINYSKSNIFFSKNSHPKFKR 329
+++THL FADD L+F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 330 MITKALKVKYASTSEKYLGAQLFIGATKTKVFNDLIEQVNKKLNTWNHSFLSQAGRTVVI 389
I + + +YLG L T + L+E++ ++ W LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 390 SDVAAAVPRYQMQCFALPKSVSKRIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGL 446
S V ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 447 GLHLPELDNKAFLSKLAWRLRTEPNAAWVQLL------KAKYYPNSDRPGRVKPHNSWIL 500
G+ + NK L KL WR+ + + WVQ L K ++ S SW+
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMW 239
Query: 501 KNINKYNDQVNDLSCWETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQL 553
K I K+ + + H+G++ + W D W + + + +T V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA 299
Query: 554 ITNDTWNEH-----ILIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHL 608
+ N H + IE+ R+ T +G D ++W GN I ++
Sbjct: 300 VVNHRPRRHRHDTLLRIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNT 350
Query: 609 RN--HNSDNPTNNHNW-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPK 664
+ + P NW K +W + P+ + W L +R+ + G D C
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 665 C-AVPETMEHALLHCPMAKNIW 685
C + ET +H CP + +W
Sbjct: 411 CHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 184/442 (41%), Gaps = 41/442 (9%)
Query: 270 LVLTHLLFADDCLIFGRNSLDNIANLKNLLRIFCDSSGQMINYSKSNIFFSKNSHPKFKR 329
+++THL FADD L+F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 330 MITKALKVKYASTSEKYLGAQLFIGATKTKVFNDLIEQVNKKLNTWNHSFLSQAGRTVVI 389
I + + +YLG L T + L+E++ ++ W LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 390 SDVAAAVPRYQMQCFALPKSVSKRIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGL 446
S V ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 447 GLHLPELDNKAFLSKLAWRLRTEPNAAWVQLL------KAKYYPNSDRPGRVKPHNSWIL 500
G+ + NK L KL WR+ + + WVQ L K ++ S SW+
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMW 239
Query: 501 KNINKYNDQVNDLSCWETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQL 553
K I K+ + + H+G++ + W D W + + + +T V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA 299
Query: 554 ITNDTWNEH-----ILIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHL 608
+ N H + IE+ R+ T +G D ++W GN I ++
Sbjct: 300 VVNHRPRRHRHDTLLRIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNT 350
Query: 609 RN--HNSDNPTNNHNW-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPK 664
+ + P NW K +W + P+ + W L +R+ + G D C
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 665 C-AVPETMEHALLHCPMAKNIW 685
C + ET +H CP + +W
Sbjct: 411 CHHLVETRDHLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 184/443 (41%), Gaps = 41/443 (9%)
Query: 270 LVLTHLLFADDCLIFGRNSLDNIANLKNLLRIFCDSSGQMINYSKSNIFFSKNSHPKFKR 329
+++THL FADD L+F +I + + F D SG I+ KS I+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 330 MITKALKVKYASTSEKYLGAQLFIGATKTKVFNDLIEQVNKKLNTWNHSFLSQAGRTVVI 389
I + + +YLG L T + L+E++ ++ W LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 390 SDVAAAVPRYQMQCFALPKSVSKRIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGL 446
S V ++ + M F LP + K I ++ SF W + K AW+ +C PK EGGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 447 GLHLPELDNKAFLSKLAWRLRTEPNAAWVQ------LLKAKYYPNSDRPGRVKPHNSWIL 500
G+ + NK L KL WR+ + + WVQ L K ++ S SW+
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMW 239
Query: 501 KNINKYNDQVNDLSCWETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQL 553
K I K+ + + H+G++ + W D W + + + +T V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA 299
Query: 554 ITNDTWNEH-----ILIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHL 608
+ N H + IE+ R+ T +G D ++W GN I ++
Sbjct: 300 VVNHRPRRHRHDTLLRIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNT 350
Query: 609 RN--HNSDNPTNNHNW-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPK 664
+ + P NW K +W + P+ + W L +R+ + G D C
Sbjct: 351 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 410
Query: 665 C-AVPETMEHALLHCPMAKNIWF 686
C + ET +H CP + + F
Sbjct: 411 CHHLVETRDHLFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 152/367 (41%), Gaps = 40/367 (10%)
Query: 345 KYLGAQLFIGATKTKVFNDLIEQVNKKLNTWNHSFLSQAGRTVVISDVAAAVPRYQMQCF 404
+YLG L T + L+E++ ++ W LS AGR +IS V ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 405 ALPKSVSKRIMTLQKSFWWGKSKGICTK---AWNSICLPKKEGGLGLHLPELDNKAFLSK 461
LP + K I ++ SF W + K AW+ +C PK EGGLG+ + NK L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 462 LAWRLRTEPNAAWVQLL------KAKYYPNSDRPGRVKPHNSWILKNINKYNDQVNDLSC 515
L WR+ + + WVQ L K ++ S SW+ K I K+ +
Sbjct: 146 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNT----TLGSWMWKKILKHRALASGFVK 200
Query: 516 WETHSGNDINIWTDKWIPTFS----SPPQNSFNSNLT---KVSQLITNDTWNEH-----I 563
+ H+G++ + W D W + + + +T V++ + N H +
Sbjct: 201 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLL 260
Query: 564 LIENFDENTRNMIKTIPIDSNGRDQLKWNLTNSGNFTIKSMYYHLRN--HNSDNPTNNHN 621
IE+ R+ T +G D ++W GN I ++ + + P N
Sbjct: 261 RIEDVIAEVRHQGLT-----SGEDTVRWK----GNGDIFKPCFNTKETWAATREPKLKVN 311
Query: 622 W-KFIWEIPSIPRIQLFIWKICTKALPVKNRIGKF-IGNDLLCPKC-AVPETMEHALLHC 678
W K +W + P+ + W L +R+ + G D C C + ET +H C
Sbjct: 312 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 371
Query: 679 PMAKNIW 685
P + +W
Sbjct: 372 PYSAEVW 378