BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2840.1
(869 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 113 6e-28
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 59 8e-09
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 55 1e-07
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 113 bits (283), Expect = 6e-28, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 13/228 (5%)
Query: 9 SETTMSISTTS---SPFAVHPS-DSPTTVMITPLLSG-DNYHSWSRGMTKALRAKDKLGF 63
+ET S+S TS SP+ + P P+ I L DNY +W LR K GF
Sbjct: 2 AETIKSVSPTSDPDSPYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGF 61
Query: 64 VNGTIPKPTNPNDLHS-WEHCNDLVVSWITNSIDPNLRDSVLYDDVAADIWKNLHDRFHQ 122
++GT+PKP + L+ WE CN +V+ W+ NS+ L +SV+Y + A +W++L F
Sbjct: 62 IDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVP 121
Query: 123 TNAPKVFQLKRAIASLKREGSDVSSYFTRLKSLQDELLSLMTIDPCICGH-----EKSII 177
K++QL+R +A+L++ G V YF +L + EL I C CG K
Sbjct: 122 CVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAE 181
Query: 178 DRSNQDRSMEFLQG--LHDRFLNIRSQILLMDPFPSLLKIHSLVKQEE 223
+ +++ EFL G L+ F + ++I+ P PSL + ++VK E
Sbjct: 182 EAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 17/200 (8%)
Query: 43 NYHSWSRGMTKALRAKDKLGFVNGTIPKPTNPNDLHSWEHCNDLVVSWITNSIDP-NLRD 101
NY +W + D +G ++GT+ PTN ND+ +W+ + +V + ++ P +
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTL-LPTNANDV-NWQKRDGIVKLSLYGTLTPKQFQG 87
Query: 102 SVLYDDVAADIWKNLHDRFHQTNAPKVFQLKRAIASLKREGSDVSSYFTRLKSLQDELLS 161
S + + DIW + ++F + +L + + V+ Y+ ++K L D S
Sbjct: 88 SFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLAD---S 144
Query: 162 LMTIDPCICGHEKSIIDRSNQDRSMEFLQGLHDRFLNIRSQILLMDPFPSLLKIHSLVKQ 221
L +D + ++++ M L GL+ +F NI + I PFPS +++++
Sbjct: 145 LRNVDVPV----------TDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 222 EEIQ-QTIVNSSPTTVEAAS 240
EE + + + +PT V+ +S
Sbjct: 195 EEDRLKRAIKPNPTHVDHSS 214
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 33 VMITPLLSGDNYHSWSRGMTKALRAKDKLGFVNGTIPKPTNPNDLHSWEHCNDLVVSWIT 92
+ +T L+ NY W + LG ++G+ PT P W+ + LV WI
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 93 NSIDPNLRDSVLYDDVAA-DIWKNLHDRFHQTNAPKVFQLKRAIASLKREGSDVSSYFTR 151
+I +L D+++ A D+W +L + F + Q + + + + V Y +
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 152 LKSLQDELLSLMTIDPCICGHEKSIIDRSNQDRSMEFLQGLHDRFLNIRSQILLMDPFPS 211
LKSL D L +D I S++ M L GL +++ I + I PFPS
Sbjct: 140 LKSLSD---LLTNVDSPI----------SDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 186
Query: 212 LLKIHSLVKQEE 223
+ S++ EE
Sbjct: 187 FTEARSMLLMEE 198