BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3020.1
(743 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 137 6e-33
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 137 6e-33
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 91 5e-21
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 6e-13
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 52 1e-07
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 574 LLLVEDNEPSTYTEAMTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFK 633
+ + + EPSTY EA + W GAM E+ +M W + LP KPIGCKW++K
Sbjct: 78 VCIAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 634 MKTDKDGNVSVFKARLVAKGYRQVQGIDYEETFSPVVMLKSIRIILAIAAHYDYEIWQMD 693
+K + DG + +KARLVAKGY Q +GID+ ETFSPV L S+++ILAI+A Y++ + Q+D
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 694 VKTAFLNGKAKMDYNKKLKEKTKHKENNPMP 724
+ AFLNG + KL ++ + +P
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLP 225
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 574 LLLVEDNEPSTYTEAMTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFK 633
+ + + EPSTY EA + W GAM E+ +M W + LP KPIGCKW++K
Sbjct: 78 VCIAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 634 MKTDKDGNVSVFKARLVAKGYRQVQGIDYEETFSPVVMLKSIRIILAIAAHYDYEIWQMD 693
+K + DG + +KARLVAKGY Q +GID+ ETFSPV L S+++ILAI+A Y++ + Q+D
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 694 VKTAFLNGKAKMDYNKKLKEKTKHKENNPMP 724
+ AFLNG + KL ++ + +P
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLP 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 91.3 bits (225), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 581 EPSTYTEAMTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFKMKTDKDG 640
EP + A+ P W AM+ E++++S N+ W LV P +GCKW+FK K DG
Sbjct: 27 EPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDG 83
Query: 641 NVSVFKARLVAKGYRQVQGIDYEETFSPVVMLKSIRIILAIAAHYD 686
+ KARLVAKG+ Q +GI + ET+SPVV +IR IL +A +
Sbjct: 84 TLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLE 129
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 66.6 bits (161), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 364 NRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAVE-KTPYEIWTRKVPKLSFL 422
NRT+++ VRSM+ LP TF A TA +N+ PS A+ P E+W + VP S+L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 423 KVWGCDVYVKRLQGDKLAPRSDKCLFVGYPKETKGYYFYN 462
+ +GC Y+ +G KL PR+ K E KG Y N
Sbjct: 62 RRFGCVAYIHCDEG-KLKPRAKK-------GEEKGSYLIN 93
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 195 NQSYLWHCRLGHINMKRMQKLHSDGLLGSCDLESYDTCEPCLVGKMTRSSFKGKGDRVSE 254
+++ LWH RL H++ + M+ L G L S + S CE C+ GK R +F
Sbjct: 67 DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126
Query: 255 PLGLIHTDVCGPMS 268
PL +H+D+ G S
Sbjct: 127 PLDYVHSDLWGAPS 140