BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3070.1
(225 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12210.2 | DNA binding protein | Chr3:3894843-3895879 FORWARD... 258 1e-87
AT3G12210.1 | DNA binding protein | Chr3:3894843-3895498 FORWARD... 193 7e-63
>AT3G12210.2 | DNA binding protein | Chr3:3894843-3895879 FORWARD
LENGTH=209 | 201606
Length = 209
Score = 258 bits (658), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 136/201 (67%), Positives = 165/201 (82%), Gaps = 3/201 (1%)
Query: 1 MDFGCSELSKWKESLSSYQSTLESINKPQLLELDDFYRNQLPPLLLQRNPNSFITKPELT 60
++F CS++ WKE+LSSY S +ES+NKP+L+ LD FYR +LP LL R+PN ++T EL+
Sbjct: 3 LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62
Query: 61 KLMQWKLTRGKWRPRLLDFVSSLDEKVVKSASEKAFKSLPDVSKAISELTVLKGVGPATA 120
+LM+WKL+RGKWRPRLLDFVSSLD+ VVKSASEKAFKSLPD+SKA+ ELTVLKGVG ATA
Sbjct: 63 QLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVLKGVGAATA 122
Query: 121 SAILAAYAPDVAPFMSDEAMVAALGNSKDYTLKQYIKFTEKLVTKSKELSVEGESFTPSD 180
SA+LAAYAPD+APFMSDEAM ALGNSKDY+LKQY+ F KL K+KEL ++GE PSD
Sbjct: 123 SAVLAAYAPDIAPFMSDEAMEVALGNSKDYSLKQYLLFATKLQDKAKELKLKGEWDGPSD 182
Query: 181 VERALWSSAIGVK---ENSSS 198
+ERALWS + K E SSS
Sbjct: 183 IERALWSCTVRAKSQPEKSSS 203
>AT3G12210.1 | DNA binding protein | Chr3:3894843-3895498 FORWARD
LENGTH=155 | 201606
Length = 155
Score = 193 bits (490), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 121/138 (87%)
Query: 1 MDFGCSELSKWKESLSSYQSTLESINKPQLLELDDFYRNQLPPLLLQRNPNSFITKPELT 60
++F CS++ WKE+LSSY S +ES+NKP+L+ LD FYR +LP LL R+PN ++T EL+
Sbjct: 3 LEFKCSDVGVWKEALSSYDSRIESLNKPELVSLDQFYRIKLPCLLHDRDPNPYLTTSELS 62
Query: 61 KLMQWKLTRGKWRPRLLDFVSSLDEKVVKSASEKAFKSLPDVSKAISELTVLKGVGPATA 120
+LM+WKL+RGKWRPRLLDFVSSLD+ VVKSASEKAFKSLPD+SKA+ ELTVLKGVG ATA
Sbjct: 63 QLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVLKGVGAATA 122
Query: 121 SAILAAYAPDVAPFMSDE 138
SA+LAAYAPD+APFMSDE
Sbjct: 123 SAVLAAYAPDIAPFMSDE 140