BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3100.1
(335 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 102 8e-24
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 76 7e-15
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 48 1e-06
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 50 2e-06
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 50 2e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 102 bits (254), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 49/337 (14%)
Query: 1 MQAKQIWRIIEQPNSLSNQILKTKYF-PNNQLNQARFNNCSWVWKTLSKHIPIVSTLIQW 59
+ KQ+WR++ +P SL ++ K++YF ++ LN + S+VWK++ I+ +
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127
Query: 60 EVGDGKSINIWEHKWI---PGFNNLR-------QTSSETEVQWVNQLID-NHTQWNTQLL 108
VG+G+ I IW HKW+ P LR + +S + + V+ LID + +W ++
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187
Query: 109 AQLFPSEVVSSIQSIPIRGGT---DTPRWADTTTGEYIISSMYKYLTY--------NQST 157
LFP EV + GG D+ W T++G+Y + S Y LT + +
Sbjct: 188 EMLFP-EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVS 246
Query: 158 DQGNENLWKKIWNNKLHPRVKLFMWKLTQNIVPFKSIIGPYIALDDYKCSLCNHEHEDRS 217
+ +++KIW ++ P+++ F+WK N +P + + C C E +
Sbjct: 247 EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVN 306
Query: 218 HFIHHCPIFHRVMFALPFTIRYQLLPNTSFEEWCYAI------------NSPSHTKNSME 265
H + C F R+ +A+ +P EW +I +P K S
Sbjct: 307 HLLFKC-TFARLTWAI------SSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ- 358
Query: 266 TTLFLIIPITIWFIWKHRCEIVFNKQSLNISSITQQV 302
++P +W +WK+R E+VF + N + ++
Sbjct: 359 -----LVPWLLWRLWKNRNELVFRGREFNAQEVLRRA 390
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 46/335 (13%)
Query: 21 LKTKYFPNNQLNQARFNNC-SWVWKTLSKHIPIVSTLIQWEVGDGKSINIWEHKWI---- 75
+K +YF + + A+ S+ W +L I ++ + +GDG++I I +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 76 PGFNNLRQTSSETEVQWVNQLIDNHTQWNTQLLAQLFPSEVVSSIQSIPIRGGT--DTPR 133
P N +T E + + + ++ W+ ++Q I I + D
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 134 WADTTTGEYIISSMYKYLTYNQSTD-------QGNENLWKKIWNNKLHPRVKLFMWK-LT 185
W TTGEY + S Y LT++ ST+ G+ +L +IWN + P++K F+W+ L+
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 186 QNIVPFKSIIGPYIALDDYKCSLCNHEHEDRSHFIHHCPIFHRVMFALPFT--IRYQLLP 243
Q + + + + +D C C+ E+E +H + CP F + + L + IR QL+
Sbjct: 181 QALATTERLTTRGMRIDP-SCPRCHRENESINHALFTCP-FATMAWRLSDSSLIRNQLMS 238
Query: 244 NTSFEEWCYAINSPSHTKNSMETTLFLIIPI-TIWFIWKHRCEIVFNKQSLNISSITQQV 302
N FEE N + +++ + ++P+ IW IWK R +VFNK
Sbjct: 239 N-DFEE--NISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNK------------ 283
Query: 303 MTFIYTSPSQT----RTYTYGWIHI----KQTPIP 329
SPS+T + T+ W++ K+TP P
Sbjct: 284 ---FRESPSKTVLSAKAETHDWLNATQSHKKTPSP 315
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 1 MQAKQIWRIIEQPNSLSNQILKTKYFPNNQLNQARFN-NCSWVWKTLSKHIPIVSTLIQW 59
+ AKQ +RII QP++L +++L+++YFP++ + + S+ W+++ ++S +
Sbjct: 69 LLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLR 128
Query: 60 EVGDGKSINIWEHKWI 75
+GDG +W +WI
Sbjct: 129 TIGDGIHTKVWLDRWI 144
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 21/227 (9%)
Query: 40 SWVWKTLSKHIPIVSTLIQWEVGDGKSINIWEHKWIPGFNNLRQTSSETEVQW------- 92
SW+WK + KH + S ++ ++ +G + + W W + T +
Sbjct: 182 SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS 241
Query: 93 VNQLIDNHTQWNTQLLAQLFPSEVVSSIQSIPIRGGTDTPRWADTTTGEYIISSMYKYLT 152
V + + NH + L +V++ ++ + G DT RW G+ T
Sbjct: 242 VAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKG--NGDIFKPCFNTKET 299
Query: 153 YNQSTD-QGNENLWKKIWNNKLHPRVKLFMWKLTQNIVPFKSIIGPYIALDDYKCSLCNH 211
+ + + + N +K +W + P+ + W +N + + + A D C LC+H
Sbjct: 300 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 359
Query: 212 EHEDRSHFIHHCP-------IFHRVMFALPFTIRYQ----LLPNTSF 247
E R H CP R + + FT R++ LL N S
Sbjct: 360 LVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRWEAILKLLTNKSL 406
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 40 SWVWKTLSKHIPIVSTLIQWEVGDGKSINIWEHKWIPGFNNLRQTSSETEVQW------- 92
SW+WK + KH + S ++ ++ +G + + W W + T +
Sbjct: 236 SWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHAS 295
Query: 93 VNQLIDNHTQWNTQLLAQLFPSEVVSSIQSIPIRGGTDTPRWADTTTGEYIISSMYKYLT 152
V + + NH + L +V++ ++ + G DT RW G+ T
Sbjct: 296 VAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKET 353
Query: 153 YNQSTD-QGNENLWKKIWNNKLHPRVKLFMWKLTQNIVPFKSIIGPYIALDDYKCSLCNH 211
+ + + + N +K +W + P+ + W +N + + + A D C LC+H
Sbjct: 354 WAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHH 413
Query: 212 EHEDRSHFIHHCPIFHRVMFALPFTIRY 239
E R H CP V PF RY
Sbjct: 414 LVETRDHLFFTCPYSAEV----PFLTRY 437