BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3140.1
(842 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 103 3e-22
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 103 3e-22
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 94 2e-21
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 62 9e-11
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 52 1e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 732 RTTRRPAHLPDYLCSCTTVPTTSTKYPLTDYVSFDKFTPSHRVFLNSVVNTEEPTSYSAA 791
R TR+PA+L DY C + T + ++ ++S++K +P + FL + +EP++Y+ A
Sbjct: 36 RRTRKPAYLQDYYCHSVA---SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA 92
Query: 792 KVFPEWRAAMDKEIQALEQNCTWSLTPLSPGKKLTGCKWVYKIKYRSDGTL 842
K F W AMD EI A+E TW + L P KK GCKWVYKIKY SDGT+
Sbjct: 93 KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 732 RTTRRPAHLPDYLCSCTTVPTTSTKYPLTDYVSFDKFTPSHRVFLNSVVNTEEPTSYSAA 791
R TR+PA+L DY C + T + ++ ++S++K +P + FL + +EP++Y+ A
Sbjct: 36 RRTRKPAYLQDYYCHSVA---SLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEA 92
Query: 792 KVFPEWRAAMDKEIQALEQNCTWSLTPLSPGKKLTGCKWVYKIKYRSDGTL 842
K F W AMD EI A+E TW + L P KK GCKWVYKIKY SDGT+
Sbjct: 93 KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 94.4 bits (233), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 8/193 (4%)
Query: 57 DYAEWAHSMHDALIIKNKQGFIDGSLPKPTDPAQLHA-WTRCDTMVATWISNSVSEEIQL 115
+Y W L + K GFIDG+LPKP + L+ W +C+ MV W+ NS+++++
Sbjct: 41 NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLE 100
Query: 116 STRRLASAYDLWKNLKEYFATSNATCIYQLKKNISALTQEHQTIPAYYSQLKSYWDELD- 174
S +A+ +W++L+ F IYQL++ ++ L Q ++ Y+ +L W EL
Sbjct: 101 SVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSE 160
Query: 175 -AIIPPTSCA---CPVGKTTIEYHLTSRTIEFLMG--LHERYSATCNNNLLMEPLPSLAK 228
A IP C C K E + EFLMG L++ + A + +P PSL +
Sbjct: 161 YAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHE 220
Query: 229 VYNLVIQEEQKNK 241
+ +V E K
Sbjct: 221 AFAMVKDAESMMK 233
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 766 DKFTPSHRVFLNSVVNTEEPTSYSAAKVFPEWRAAMDKEIQALEQNCTWSLTPLSPGKKL 825
+K P + + + + + +EP S A P W AM +E+ AL +N TW L P + +
Sbjct: 10 NKLNPKYSLTITTTIK-KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 826 TGCKWVYKIKYRSDGTL 842
GCKWV+K K SDGTL
Sbjct: 69 LGCKWVFKTKLHSDGTL 85
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 76 GFIDGSLPKPTDPAQLHAWTRCDTMVATWISNSVSEEIQLSTRRLA-SAYDLWKNLKEYF 134
G IDGS PT P W D +V WI ++++ + + ++ +A DLW +L+ F
Sbjct: 51 GHIDGS-STPT-PMTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLF 108
Query: 135 ATSNATCIYQLKKNISALTQEHQTIPAYYSQLKSYWDELDAIIPPTSCACPVGKTTIEYH 194
+ Q + + T + ++ Y +LKS D L T+ P+ + H
Sbjct: 109 RDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLL------TNVDSPISDRVLVMH 162
Query: 195 LTSRTIEFLMGLHERYSATCNNNLLMEPLPSLAKVYNLVIQEEQK 239
L L GL E+Y N P PS + ++++ EE +
Sbjct: 163 L-------LNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESR 200