BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3170.1
(108 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 50 4e-08
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 45 1e-06
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 44 5e-06
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 44 5e-06
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 44 5e-06
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 50.1 bits (118), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 1 MEEETPEHLFFRCSFSANIWKEITSSLSSVWLHANLTKDIFDNL-TIPTTKTINSFIRFV 59
+EEET H+ F C ++ ++W+ + + W + +D + L + T+T NS RF+
Sbjct: 80 IEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFL 139
Query: 60 DPFAIIWSLWYERNRRVFKDEDKS 83
PF I+W LW RN +F+ + +S
Sbjct: 140 -PFWIMWRLWKSRNVFLFQQKCQS 162
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 45.4 bits (106), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 2 EEETPEHLFFRCSFSANIWKEITSSLSSVWLHANLTKDIFDNLTIPTT-KTINSFIRFVD 60
+ET +HLFF C F+ +W TS + L +D L P K + + +R +
Sbjct: 91 HDETRQHLFFDCEFAREVWIYFTSRVHV--FPPLLFEDGIRWLKNPCQDKNVTTILR-LS 147
Query: 61 PFAIIWSLWYERNRRVFKDEDKSAANVVISIKGLVHC 97
A ++++W ERN R+ + AA +++ IK ++ C
Sbjct: 148 HHASVYTIWKERNARLHDSASRPAAALILEIKSVIRC 184
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 2 EEETPEHLFFRCSFSANIWKEITSSLSSVWLHAN-LTKDIFDNLTIPTTKTINSFIRFVD 60
E E+ H F C F+ W+ SSL L +N ++I + L T++ F + +
Sbjct: 206 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLL- 264
Query: 61 PFAIIWSLWYERNRRVFKDEDKSAANVVISIKGLVHCWI 99
P +IW +W RN VF +S + V+S K H W+
Sbjct: 265 PVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWL 303
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 4 ETPEHLFFRCSFSANIWKEITSSLSSVWLHANLTKDIFDNLTIPTTKTINSFIRFVDPFA 63
ET +HLFF C +SA +W +T L L + T L + T K++ + F+ +
Sbjct: 362 ETRDHLFFTCPYSAEVWSTLTRKL----LSQHFTNRWEAILKLLTNKSLGHEVPFLTRYT 417
Query: 64 ---IIWSLWYERNRRVFKDEDKSAANVV 88
+ SLW ERN R + ++AA +V
Sbjct: 418 FQLTLHSLWKERNGRRHGEVPQAAAQMV 445
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 4 ETPEHLFFRCSFSANIWKEITSSLSSVWLHANLTKDIFDNLTIPTTKTINSFIRFVDPFA 63
ET +HLFF C +SA +W +T L L + T L + T K++ + F+ +
Sbjct: 416 ETRDHLFFTCPYSAEVWSTLTRKL----LSQHFTNRWEAILKLLTNKSLGHEVPFLTRYT 471
Query: 64 I---IWSLWYERNRRVFKDEDKSAANVV 88
+ SLW ERN R + ++AA +V
Sbjct: 472 FQLTLHSLWKERNGRRHGEVPQAAAQMV 499