BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3240.1
(213 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 65 4e-12
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 65 4e-12
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 65 5e-12
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 75 ISHLLFADDLIPFGNATTENLQGIISIINCYSSFSGQAINLDKSSLYFGPGVPNAMMDAY 134
I+HL FADDL+ F + +++GI+ I ++ FSG I+L+KS++Y N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 135 TRELTAPLMMDHTKYLGALILKPGNRIQSYDWLIEKFNKMLAGWKNKLVSQAGRTTLIKS 194
A + +YLG +L Y L+EK + W + +S AGR LI S
Sbjct: 68 HSFPFASGALP-VRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 195 VLNSYCTYPFS 205
V++S + S
Sbjct: 127 VIHSLTNFWMS 137
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 65.1 bits (157), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 75 ISHLLFADDLIPFGNATTENLQGIISIINCYSSFSGQAINLDKSSLYFGPGVPNAMMDAY 134
I+HL FADDL+ F + +++GI+ I ++ FSG I+L+KS++Y N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 135 TRELTAPLMMDHTKYLGALILKPGNRIQSYDWLIEKFNKMLAGWKNKLVSQAGRTTLIKS 194
A + +YLG +L Y L+EK + W + +S AGR LI S
Sbjct: 68 HSFPFASGALP-VRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 195 VLNSYCTYPFS 205
V++S + S
Sbjct: 127 VIHSLTNFWMS 137
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 64.7 bits (156), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 75 ISHLLFADDLIPFGNATTENLQGIISIINCYSSFSGQAINLDKSSLYFGPGVPNAMMDAY 134
I+HL FADDL+ F + +++GI+ I ++ FSG I+L+KS++Y N D
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 135 TRELTAPLMMDHTKYLGALILKPGNRIQSYDWLIEKFNKMLAGWKNKLVSQAGRTTLIKS 194
A + +YLG +L Y L+EK + W + +S AGR LI S
Sbjct: 68 HSFPFASGALP-VRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 195 VLNSYCTYPFS 205
V++S + S
Sbjct: 127 VIHSLTNFWMS 137