BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3340.1
(518 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32420.1 | F-box and associated interaction domains-containin... 74 5e-14
AT4G19940.1 | F-box and associated interaction domains-containin... 74 9e-14
AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWAR... 73 1e-13
AT5G62510.1 | F-box family protein | Chr5:25095373-25096635 REVE... 64 2e-10
AT4G38870.1 | F-box and associated interaction domains-containin... 63 3e-10
>AT1G32420.1 | F-box and associated interaction domains-containing
protein | Chr1:11701995-11702903 FORWARD LENGTH=302 |
201606
Length = 302
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 60/288 (20%)
Query: 71 LIFEILTRLPVKTLIRFKSVCKHWCSLIQKDQNFIDLHLTRSRKRPPRIFIVVPLPRTKA 130
L EIL +LP K+L+RF+ V K W S+I ++FID +TRS +PP PR
Sbjct: 41 LTVEILKKLPAKSLLRFQCVSKQWLSIISSRRDFIDSIVTRSLTQPP--------PR--- 89
Query: 131 QVKLLNRLQGASYYDYWPYKEFHITADLLVKEEEEPVDNNGVRTSRGTKLKLVVDTVRKI 190
+KL+ Q +P F I + + N + S T+
Sbjct: 90 DIKLIFHHQVL-----YPGPHFFIFSSTYPQ--------NTDKESLTTR----------- 125
Query: 191 NSSSYHEMLKPINGLICLIDNYIKHGVRIRNICTGQVSPWFHSSLGEGEKYPHGFPYYGF 250
+SSYH + GLIC ++ V I N T Q + ++ + +Y + + F
Sbjct: 126 -ASSYHY----VRGLICCW-SHCPTTVDIYNPTTRQ-----YYTVPDTNRYQYIETCF-F 173
Query: 251 GFDPATNEHKLVCVWDMQSGINHYICEVLTIGHQGNSINNNNRWRRIEDVPPDGPWGDSV 310
G+DP N++K++ + + + C+V T+ G+ I WR I+ + D+V
Sbjct: 174 GYDPVENQYKVMVL--PKYYMEESPCQVFTV---GDPIEKP--WRDIQGIGVHFLLKDAV 226
Query: 311 YVNGVIYWTNFSLFRWPKCKYSPVCLVAFDVGSEKFRTITVPDFILDQ 358
+NGVIY+ + + S LV+FDV SEKF + P + D
Sbjct: 227 CINGVIYYQATNEYG------STYFLVSFDVRSEKFNHVKAPKILTDH 268
>AT4G19940.1 | F-box and associated interaction domains-containing
protein | Chr4:10806195-10807430 FORWARD LENGTH=411 |
201606
Length = 411
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 56/304 (18%)
Query: 71 LIFEILTRLPVKTLIRFKSVCKHWCSLIQKDQNFIDLHLTRSRKRPPRIFIVVPLPRTKA 130
L+ EILTRLP K+L+RFKSV K W SLI +NF + L S PPR+F+ +
Sbjct: 39 LVIEILTRLPAKSLMRFKSVSKLWSSLICS-RNFTNRLLKLS--SPPRLFMCLSSSDNS- 94
Query: 131 QVKLLNRLQGASYYDYWPYKEFHITADLLVKEEEEPVDNNGVRTSRGTKLKLVVDTVRKI 190
H+ LL P D++ +S V+D +
Sbjct: 95 ----------------------HLKTVLL--SLSSPPDSDITMSSS------VIDQDLTM 124
Query: 191 NSSSYHEMLKPINGLICLIDNYIKHGVRIRNICTGQ--VSPWFHSSLGEGEKYPHGFPYY 248
+++ GL+CL+ K +I N T Q V P S E++ Y
Sbjct: 125 PGMKGYQISHVFRGLMCLVK---KSSAQIYNTTTRQLVVLPDIEESTILAEEHKSKKIMY 181
Query: 249 GFGFDPATNEHKLVCVWDMQSG-INHY--ICE--VLTIGHQGNSINNNNRWRRIE-DVPP 302
G DP +++K+VC+ S + Y + E VL + +G + RWR+I PP
Sbjct: 182 HIGHDPVYDQYKVVCIVSRASDEVEEYTFLSEHWVLLLEGEG-----SRRWRKISCKYPP 236
Query: 303 DGPWGDSVYVNGVIYWTNFSLFRWPKCKYSPVCLVAFDVGSEKFRTITVPDFILDQSGDA 362
P G + ++G +++ W + + V LV FD SE+F + VP I +
Sbjct: 237 HVPLGQGLTLSGRMHY-----LAWVRVSDNRV-LVIFDTHSEEFSMLQVPGDIFWKYNGL 290
Query: 363 LDQG 366
L+ G
Sbjct: 291 LEYG 294
>AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWARD
LENGTH=427 | 201606
Length = 427
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 54/302 (17%)
Query: 71 LIFEILTRLPVKTLIRFKSVCKHWCSLIQKDQNFIDLHLTRSRKRPPRIFIVVPLPRTKA 130
+I EIL RLP K++ RF+ V K +C+L D F +HL L
Sbjct: 40 IITEILLRLPAKSIGRFRCVSKLFCTL-SSDPGFAKIHLD--------------LILRNE 84
Query: 131 QVKLLNRLQGASYYDYWPYKEFHI---TADLLVKEEEEPVDNN------GVRTSRGTKLK 181
V+ L+R S ++ + I DL E P+ ++ +R G L
Sbjct: 85 SVRSLHRKLIVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLY 144
Query: 182 LVVDTVRKINSSSYH----EMLKPINGLICLIDNYIKHGVRIRNICTG---QVSPWFHSS 234
+ K+N+ SY E++ NGL+C+ + V + N TG ++ F
Sbjct: 145 DDRRVMLKLNAKSYRRNWVEIVGSSNGLVCISPG--EGAVFLYNPTTGDSKRLPENFRPK 202
Query: 235 LGEGEKYPHGFPYYGFGFDPATNEHKLVCVWDMQSGINHYICEVLTIGHQGNSINNNNRW 294
E E+ F YGFGFD T+++KLV + + I + + +S W
Sbjct: 203 SVEYER--DNFQTYGFGFDGLTDDYKLVKL----VATSEDILDASVYSLKADS------W 250
Query: 295 RRIEDVP---PDGPWGDSVYVNGVIYWTNFSLFRWPKCKYSPVCLVAFDVGSEKFRTITV 351
RRI ++ DG + V+ NG I+W + + +++ +VAFD+ +E+FR + V
Sbjct: 251 RRICNLNYEHNDGSYTSGVHFNGAIHWV------FTESRHNQRVVVAFDIQTEEFREMPV 304
Query: 352 PD 353
PD
Sbjct: 305 PD 306
>AT5G62510.1 | F-box family protein | Chr5:25095373-25096635 REVERSE
LENGTH=420 | 201606
Length = 420
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 61/301 (20%)
Query: 71 LIFEILTRLPVKTLIRFKSVCKHWCSLIQKDQNFIDLHLTRSRKRPPRIFIVVPLPRTKA 130
L+ EILTRLP K+L+RFK V K W SLI + + F + +LT + PL +
Sbjct: 48 LLIEILTRLPHKSLMRFKCVSKQWSSLI-RSRFFSNRYLT----------VASPLRPHRL 96
Query: 131 QVKLLNRLQGASYYDYWPYKEFHITADLLVKEEEEPVDNNGVRTSRGTKLKLVVDTVRKI 190
+ L++ + + P + ++ +++ G+ L+ ++
Sbjct: 97 YISLVDHKCDSREVCHSPRESVLLSFSSPSSFDQDLTTMQGMGGLHMVTLRGLI------ 150
Query: 191 NSSSYHEMLKPINGLICLIDNYIKHGVRIRNICTGQVSPWFHSSLGEGEKYPHGFPYYGF 250
L + G CL + + V + I F+ + E H Y+
Sbjct: 151 --------LYIVCGKACLYNPTTRQSVTLPAI-------KFNIFVQGNE---HSLLYF-L 191
Query: 251 GFDPATNEHKLVCVW------DMQSGINHYICEVLTIGHQGNSINNNNRWRRIEDVPPDG 304
G DP +++K+VC + D+++ I+ + VL +G W+RIE P
Sbjct: 192 GHDPVLDQYKVVCTFVSSSSQDLETIISEHWVFVLEVG---------GSWKRIEFDQPHT 242
Query: 305 PWGDSVYVNGVIYWTNF-SLFRWPKCKYSPVCLVAFDVGSEKFRTITVPDFILDQSGDAL 363
P + + GVIY+ F S+F+ +V FDV SE+F I P +L D+L
Sbjct: 243 PTRSGLCIGGVIYYLAFTSMFQ--------DIVVTFDVRSEEFNIIQAP-LVLSAYVDSL 293
Query: 364 D 364
D
Sbjct: 294 D 294
>AT4G38870.1 | F-box and associated interaction domains-containing
protein | Chr4:18132583-18133863 REVERSE LENGTH=426 |
201606
Length = 426
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 135/326 (41%), Gaps = 71/326 (21%)
Query: 34 PNKKKNNNKKKEKVSCNVTSSANPISSISSRSSNEDWLIFEILTRLPVKTLIRFKSVCKH 93
P+ + KK KVS N S P+ LI EIL +L +K LIRF V K
Sbjct: 33 PSTMETQRKKFTKVSVN--SELLPVD-----------LIMEILKKLSLKPLIRFLCVSKL 79
Query: 94 WCSLIQKDQNFIDLHLTRSRKRPPRIFIVVPLPRTKAQVKLLNRLQGASYYDYWPYKEFH 153
W S+I +D F+ L L S L R K+ V + R Q
Sbjct: 80 WASII-RDPYFMKLFLNES------------LKRPKSLV-FVFRAQSLG----------S 115
Query: 154 ITADLLVKEEEEPVDNNGVRTSRGTKLKLVVDTVRKINSSSYHEMLKPINGLICLIDNYI 213
I + + +K E ++ ++ + T +++ S ++GLIC
Sbjct: 116 IFSSVHLKSTREISSSSSSSSASSITYHVTCYTQQRMTISP------SVHGLICYGP--- 166
Query: 214 KHGVRIRNICTGQVSPWFHSSLGEGEKYPHGFPYYGFGFDPATNEHKLVCV------WDM 267
+ I N CT + + G + + + G+DP +K+VC+
Sbjct: 167 PSSLVIYNPCTRRSITL--PKIKAGRRAINQY----IGYDPLDGNYKVVCITRGMPMLRN 220
Query: 268 QSGINHYICEVLTIGHQGNSINNNNRWRRIEDV-PPDGPWGDSVYVNGVIYWTNFSLFRW 326
+ G+ I +VLT+G + +S WR I D+ PP P + + +NGV+Y+ F
Sbjct: 221 RRGLAEEI-QVLTLGTRDSS------WRMIHDIIPPHSPVSEELCINGVLYYRAFI---- 269
Query: 327 PKCKYSPVCLVAFDVGSEKFRTITVP 352
K + +++FDV SEKF I VP
Sbjct: 270 -GTKLNESAIMSFDVRSEKFDLIKVP 294