BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3390.1
(1174 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 468 e-146
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 468 e-146
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 232 3e-69
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 104 2e-25
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 97 1e-23
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 468 bits (1203), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/568 (42%), Positives = 351/568 (61%), Gaps = 30/568 (5%)
Query: 586 SASTQDILPAQNVHSMQTRLKSGITKPKTIPDHVVH----FTIPHSMPT----------- 630
SA+ Q+ +P +VH+ R + KP + D+ H TI H +
Sbjct: 19 SANIQNDVPEPSVHTSHRRTR----KPAYLQDYYCHSVASLTI-HDISQFLSYEKVSPLY 73
Query: 631 -AYVVALHSEIEPRTYKEASKYEHWQSTMNDEYQALLKNNTWSLTPKLPHMNILGCRWIF 689
+++V + EP TY EA ++ W M+DE A+ +TW + P+ +GC+W++
Sbjct: 74 HSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVY 133
Query: 690 KIKYKSDGSLERYKARLVAQGYNQQERIDYLETFSPVVKMQTVRIVLTMAVSKGWPIHQL 749
KIKY SDG++ERYKARLVA+GY QQE ID++ETFSPV K+ +V+++L ++ + +HQL
Sbjct: 134 KIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 193
Query: 750 DVSNAFLHGDLSENVYMKQPTGFE----DDKKPGFVCHLHKALYGLKQAPRAWFHKITVY 805
D+SNAFL+GDL E +YMK P G+ D P VC+L K++YGLKQA R WF K +V
Sbjct: 194 DISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVT 253
Query: 806 LSSWGFIQSESDHSMFVFNSSHHMLIFLLYVDDIILTGTSLSLINKLVGDLTKVFAMKKL 865
L +GF+QS SDH+ F+ ++ L L+YVDDII+ + + +++L L F ++ L
Sbjct: 254 LIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDL 313
Query: 866 GDIHYFLGIEVQRISTHLHLSQTKYLLELLHKSDLIDCKPSLIPISCGKRVSK-LDGDLI 924
G + YFLG+E+ R + +++ Q KY L+LL ++ L+ CKPS +P+ S GD +
Sbjct: 314 GPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373
Query: 925 DNPLFYRSMVGGLQYVTMTRPDLTFSVNYLSQFMQEPRSSHLIMLKKVLRYVKGTIGAGI 984
D YR ++G L Y+ +TR D++F+VN LSQF + PR +H + K+L Y+KGT+G G+
Sbjct: 374 DAKA-YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432
Query: 985 MIQAGDLSSLSGFSDSDWAGCPDTRRSTSGYCIFLGSTLVSWSSKKQTTVSRSSTEAEYR 1044
+ L FSD+ + C DTRRST+GYC+FLG++L+SW SKKQ VS+SS EAEYR
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492
Query: 1045 ALSLATSELLWISYLLDELLQPVTFPVDLFCDNMGAKFLAYNPVFHARTKHIEIDFHFIR 1104
ALS AT E++W++ EL P++ P LFCDN A +A N VFH RTKHIE D H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552
Query: 1105 DL-VKNGALKIQFVASDENLADIFTKGL 1131
+ V L F A DE D FT+ L
Sbjct: 553 ERSVYQATLSYSFQAYDEQ--DGFTEYL 578
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 468 bits (1203), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/568 (42%), Positives = 351/568 (61%), Gaps = 30/568 (5%)
Query: 586 SASTQDILPAQNVHSMQTRLKSGITKPKTIPDHVVH----FTIPHSMPT----------- 630
SA+ Q+ +P +VH+ R + KP + D+ H TI H +
Sbjct: 19 SANIQNDVPEPSVHTSHRRTR----KPAYLQDYYCHSVASLTI-HDISQFLSYEKVSPLY 73
Query: 631 -AYVVALHSEIEPRTYKEASKYEHWQSTMNDEYQALLKNNTWSLTPKLPHMNILGCRWIF 689
+++V + EP TY EA ++ W M+DE A+ +TW + P+ +GC+W++
Sbjct: 74 HSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVY 133
Query: 690 KIKYKSDGSLERYKARLVAQGYNQQERIDYLETFSPVVKMQTVRIVLTMAVSKGWPIHQL 749
KIKY SDG++ERYKARLVA+GY QQE ID++ETFSPV K+ +V+++L ++ + +HQL
Sbjct: 134 KIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQL 193
Query: 750 DVSNAFLHGDLSENVYMKQPTGFE----DDKKPGFVCHLHKALYGLKQAPRAWFHKITVY 805
D+SNAFL+GDL E +YMK P G+ D P VC+L K++YGLKQA R WF K +V
Sbjct: 194 DISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVT 253
Query: 806 LSSWGFIQSESDHSMFVFNSSHHMLIFLLYVDDIILTGTSLSLINKLVGDLTKVFAMKKL 865
L +GF+QS SDH+ F+ ++ L L+YVDDII+ + + +++L L F ++ L
Sbjct: 254 LIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDL 313
Query: 866 GDIHYFLGIEVQRISTHLHLSQTKYLLELLHKSDLIDCKPSLIPISCGKRVSK-LDGDLI 924
G + YFLG+E+ R + +++ Q KY L+LL ++ L+ CKPS +P+ S GD +
Sbjct: 314 GPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373
Query: 925 DNPLFYRSMVGGLQYVTMTRPDLTFSVNYLSQFMQEPRSSHLIMLKKVLRYVKGTIGAGI 984
D YR ++G L Y+ +TR D++F+VN LSQF + PR +H + K+L Y+KGT+G G+
Sbjct: 374 DAKA-YRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432
Query: 985 MIQAGDLSSLSGFSDSDWAGCPDTRRSTSGYCIFLGSTLVSWSSKKQTTVSRSSTEAEYR 1044
+ L FSD+ + C DTRRST+GYC+FLG++L+SW SKKQ VS+SS EAEYR
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492
Query: 1045 ALSLATSELLWISYLLDELLQPVTFPVDLFCDNMGAKFLAYNPVFHARTKHIEIDFHFIR 1104
ALS AT E++W++ EL P++ P LFCDN A +A N VFH RTKHIE D H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552
Query: 1105 DL-VKNGALKIQFVASDENLADIFTKGL 1131
+ V L F A DE D FT+ L
Sbjct: 553 ERSVYQATLSYSFQAYDEQ--DGFTEYL 578
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 232 bits (592), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 159/228 (69%), Gaps = 1/228 (0%)
Query: 830 LIFLLYVDDIILTGTSLSLINKLVGDLTKVFAMKKLGDIHYFLGIEVQRISTHLHLSQTK 889
+ LLYVDDI+LTG+S +L+N L+ L+ F+MK LG +HYFLGI+++ + L LSQTK
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 890 YLLELLHKSDLIDCKPSLIPISCGKRVSKLDGDLIDNPLFYRSMVGGLQYVTMTRPDLTF 949
Y ++L+ + ++DCKP P+ K S + +P +RS+VG LQY+T+TRPD+++
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLPL-KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISY 119
Query: 950 SVNYLSQFMQEPRSSHLIMLKKVLRYVKGTIGAGIMIQAGDLSSLSGFSDSDWAGCPDTR 1009
+VN + Q M EP + +LK+VLRYVKGTI G+ I ++ F DSDWAGC TR
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179
Query: 1010 RSTSGYCIFLGSTLVSWSSKKQTTVSRSSTEAEYRALSLATSELLWIS 1057
RST+G+C FLG ++SWS+K+Q TVSRSSTE EYRAL+L +EL W S
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 104 bits (260), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 68/99 (68%)
Query: 641 EPRTYKEASKYEHWQSTMNDEYQALLKNNTWSLTPKLPHMNILGCRWIFKIKYKSDGSLE 700
EP++ A K W M +E AL +N TW L P + NILGC+W+FK K SDG+L+
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 701 RYKARLVAQGYNQQERIDYLETFSPVVKMQTVRIVLTMA 739
R KARLVA+G++Q+E I ++ET+SPVV+ T+R +L +A
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 97.4 bits (241), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 939 YVTMTRPDLTFSVNYLSQFMQEPRSSHLIMLKKVLRYVKGTIGAGIMIQAGDLSSLSGFS 998
Y+T+TRPDLTF+VN LSQF R++ + + KVL YVKGT+G G+ A L F+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 999 DSDWAGCPDTRRSTSGYC 1016
DSDWA CPDTRRS +G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79