BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3400.1
(233 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 74 3e-15
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 68 4e-13
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 54 2e-08
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 74.3 bits (181), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 24 LISARLDGSNFLVWKDQIENALIGNDLICYIDGTYTEPSQLIVVDGRDVVNPAYLQWRKT 83
++ L+ N+ VW++ E + ++ +IDG+ T P+ + +W++
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSST-PTPMTEK-----------RWKER 70
Query: 84 DSFVKSCIKATISQSIASDILGLK-TSREIWSYLGMVFLQEFEAQKSSLRNKIQNIKKGS 142
D VK I TI+ S+ I+ + T+R++W L +F EA+ N+++
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 143 SSVSEYLSKIKTIADSLVAVNDKVSDSELARIALQGLGREYSQFIIAIQNRDGGLTFAEL 202
SV EY K+K+++D L V+ +SD L L GL +Y + I+++ +F E
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 203 RSRLIHHE 210
RS L+ E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 20 NLTNLISARLD--GSNFLVWKDQIENALIGNDLICYIDGTYTEPSQLIVVDGRDVVNPAY 77
N+ + I LD SN+ W++ + D++ +IDGT L+ + DV
Sbjct: 15 NIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNANDV----- 63
Query: 78 LQWRKTDSFVKSCIKATIS-QSIASDILGLKTSREIWSYLGMVFLQEFEAQKSSLRNKIQ 136
W+K D VK + T++ + + TSR+IW + F +A+ L ++++
Sbjct: 64 -NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 122
Query: 137 NIKKGSSSVSEYLSKIKTIADSLVAVNDKVSDSELARIALQGLGREYSQFIIAIQNRDGG 196
G V++Y K+K +ADSL V+ V+D L L GL ++ I I++R
Sbjct: 123 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPF 182
Query: 197 LTFAELRSRLIHHEQWLKE 215
+F + + L E LK
Sbjct: 183 PSFDDAATMLQEEEDRLKR 201
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 30 DGSNFLVWKDQIENALIGNDLICYIDGTYTEPSQLIVVDGRDVVNPAYLQWRKTDSFVKS 89
D N++ WK + + L +IDGT +P D +P Y W + ++ V
Sbjct: 38 DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------DPFSPLYQPWEQCNAMVMY 88
Query: 90 CIKATISQSIASDILGLKTSREIWSYLGMVFLQEFEAQKSSLRNKIQNIKKGSSSVSEYL 149
+ +++ + ++ +T+ ++W L VF+ + + LR ++ +++G SV EY
Sbjct: 89 WLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYF 148
Query: 150 SKIKTI 155
K+ +
Sbjct: 149 GKLSKV 154