BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3490.1
(1289 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 115 2e-29
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 115 bits (289), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Query: 602 LKHLRIVFQVLRENSLYVKREKCSFASTKVAFLGH---WIGEGKIWMDQKKIQAIQGWEE 658
+ HL +V Q+ ++ Y R+KC+F ++A+LGH GEG + D K++A+ GW E
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEG-VSADPAKLEAMVGWPE 59
Query: 659 PTKVTQLRSFLGLVNYYRRFIEGYSKRAAPLTDLLKKNQAWLWTDKCQAAFDDLKQAVMK 718
P T+LR FLGL YYRRF++ Y K PLT+LLKKN WT+ AF LK AV
Sbjct: 60 PKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL-KWTEMAALAFKALKGAVTT 118
Query: 719 EPVLSLPDHTKPY 731
PVL+LPD P+
Sbjct: 119 LPVLALPDLKLPF 131