BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3520.1
(84 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08370.1 | decapping 1 | Chr1:2638355-2640367 FORWARD LENGTH=... 145 1e-43
>AT1G08370.1 | decapping 1 | Chr1:2638355-2640367 FORWARD
LENGTH=367 | 201606
Length = 367
Score = 145 bits (365), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 1 MTHSGKLTPNLDQESTKILNLTVLQRIDPNIEEILMTVAHVTFYEFNIRRNEWSRKDVEG 60
M+ +GK+ PNLDQ ST++LNLTVLQRIDP IEEIL+T AHVTFYEFNI ++WSRKDVEG
Sbjct: 1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60
Query: 61 SLFVVKRNTQPRFQFIVMNRRNT 83
SLFVVKR+TQPRFQFIVMNRRNT
Sbjct: 61 SLFVVKRSTQPRFQFIVMNRRNT 83