BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000112.1_g0100.1
(782 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 124 2e-29
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 108 2e-24
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 108 2e-24
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 105 4e-23
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 87 1e-17
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 186/435 (42%), Gaps = 50/435 (11%)
Query: 390 AVPRYQMQCFAIPKGISNRIEALQRAFWW---GKPKSIHTINWSAIYLPKQLGGLGFRYP 446
A+P Y M CF +PK + +I ++ FWW + K +H W + K GG+GF+
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 447 ILDNQAFLCKLVWRLNKNPNSPWASILKAKYFTK-DHKPKSAKNHHSWLWKSISNYVDKV 505
N A L K +WR+ P S A + K++YF K D + S++WKSI + +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 506 SNLTFWDINKGTNINIWQDFWIPNYP----------PPLTNRNNSNLTTVSQLI--RNNQ 553
+ G +I IW+ W+ + P PP + S++ VS LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 554 WDTNTLYQCFNRDICNAILSINIQDQQD-DIARWSLTKSGKFTIKSMYYYL----RTEHY 608
W + + F I + ++ D W T SG +T+KS Y+ L
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 609 PYDMKE------WEFIWHLPILPKIKLFLWKCCTNSLPVRDRIG-KYIGHIYHCEFCQE- 660
P ++ E ++ IW PKI+ FLWKC +NSLPV + +++ C C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301
Query: 661 QETMIHVFLHCDLAKVIWLHFNVISSNIGNIVD-------WIISWKDIE---DHISSRFA 710
+ET+ H+ C A++ W ++ G D W+ + + + S
Sbjct: 302 KETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVP 361
Query: 711 IILWHIWKARCDKCFESKDPVSMMIID---------AIKSSTNLQNTHQQIGK--VIGWS 759
+LW +WK R + F ++ + ++ I++ T Q+ + W
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421
Query: 760 PPVNPFVKINVDASF 774
PP + +VK N DA++
Sbjct: 422 PPPHQWVKCNTDATW 436
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 23/430 (5%)
Query: 267 LKHLLFTDDCIIFGQNSLENISSLQHILDTFCSSSGQMINFDKSTIFFSKNTHPKFKRII 326
+ HL F DD ++F +I + I F SG I+ +KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 327 IRNLKVHQSSNLDKYLGTHLFIGANKQRVFSSLVNQIQNKLSKWQTSLLSQAGRSIVINT 386
+ + + +YLG L + LV +I+ ++ KW LS AGR +I++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 387 IAAAVPRYQMQCFAIPKGISNRIEALQRAFWWGKPK---SIHTINWSAIYLPKQLGGLGF 443
+ ++ + M F +P I+++ +F W P+ + WS + PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 444 RYPILDNQAFLCKLVWRLNKNPNSPWASILKAKYFTKDHKPKSAKNH--HSWLWKSISNY 501
R N+ L KL+WR+ + S W L+ K + N SW+WK I +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 502 VDKVSNLTFWDINKGTNINIWQDFW--IPNYPPPLTNRNNSNL-----TTVSQLI---RN 551
S DI+ G+N + W D W I +R ++ +V++ + R
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 552 NQWDTNTLYQCFNRDICNAILSINIQDQQDDIARWSLTKS-GKFTIKSMYYYLRTEHYPY 610
+ +TL + D+ + + +D + RW K + + T
Sbjct: 306 RRHRHDTLLRI--EDVIAEVRHQGLTSGEDTV-RWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 611 DMKEWEFIWHLPILPKIKLFLWKCCTNSLPVRDRIGKY-IGHIYHCEFCQEQ-ETMIHVF 668
+ ++ +W PK + W N L DR+ + G C C ET H+F
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 669 LHCDLAKVIW 678
C + +W
Sbjct: 423 FTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 23/430 (5%)
Query: 267 LKHLLFTDDCIIFGQNSLENISSLQHILDTFCSSSGQMINFDKSTIFFSKNTHPKFKRII 326
+ HL F DD ++F +I + I F SG I+ +KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 327 IRNLKVHQSSNLDKYLGTHLFIGANKQRVFSSLVNQIQNKLSKWQTSLLSQAGRSIVINT 386
+ + + +YLG L + LV +I+ ++ KW LS AGR +I++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 387 IAAAVPRYQMQCFAIPKGISNRIEALQRAFWWGKPK---SIHTINWSAIYLPKQLGGLGF 443
+ ++ + M F +P I+++ +F W P+ + WS + PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 444 RYPILDNQAFLCKLVWRLNKNPNSPWASILKAKYFTKDHKPKSAKNH--HSWLWKSISNY 501
R N+ L KL+WR+ + S W L+ K + N SW+WK I +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 502 VDKVSNLTFWDINKGTNINIWQDFW--IPNYPPPLTNRNNSNL-----TTVSQLI---RN 551
S DI+ G+N + W D W I +R ++ +V++ + R
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 552 NQWDTNTLYQCFNRDICNAILSINIQDQQDDIARWSLTKS-GKFTIKSMYYYLRTEHYPY 610
+ +TL + D+ + + +D + RW K + + T
Sbjct: 306 RRHRHDTLLRI--EDVIAEVRHQGLTSGEDTV-RWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 611 DMKEWEFIWHLPILPKIKLFLWKCCTNSLPVRDRIGKY-IGHIYHCEFCQEQ-ETMIHVF 668
+ ++ +W PK + W N L DR+ + G C C ET H+F
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 669 LHCDLAKVIW 678
C + +W
Sbjct: 423 FTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 170/423 (40%), Gaps = 23/423 (5%)
Query: 267 LKHLLFTDDCIIFGQNSLENISSLQHILDTFCSSSGQMINFDKSTIFFSKNTHPKFKRII 326
+ HL F DD ++F +I + I F SG I+ +KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 327 IRNLKVHQSSNLDKYLGTHLFIGANKQRVFSSLVNQIQNKLSKWQTSLLSQAGRSIVINT 386
+ + + +YLG L + LV +I+ ++ KW LS AGR +I++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 387 IAAAVPRYQMQCFAIPKGISNRIEALQRAFWWGKPK---SIHTINWSAIYLPKQLGGLGF 443
+ ++ + M F +P I+++ +F W P+ + WS + PK GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 444 RYPILDNQAFLCKLVWRLNKNPNSPWASILKAKYFTKDHKPKSAKNH--HSWLWKSISNY 501
R N+ L KL+WR+ + S W L+ K + N SW+WK I +
Sbjct: 187 RSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 502 VDKVSNLTFWDINKGTNINIWQDFW--IPNYPPPLTNRNNSNL-----TTVSQLI---RN 551
S DI+ G+N + W D W I +R ++ +V++ + R
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRP 305
Query: 552 NQWDTNTLYQCFNRDICNAILSINIQDQQDDIARWSLTKS-GKFTIKSMYYYLRTEHYPY 610
+ +TL + D+ + + +D + RW K + + T
Sbjct: 306 RRHRHDTLLRI--EDVIAEVRHQGLTSGEDTV-RWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 611 DMKEWEFIWHLPILPKIKLFLWKCCTNSLPVRDRIGKY-IGHIYHCEFCQEQ-ETMIHVF 668
+ ++ +W PK + W N L DR+ + G C C ET H+F
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 669 LHC 671
C
Sbjct: 423 FTC 425
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 150/358 (41%), Gaps = 58/358 (16%)
Query: 473 LKAKYFTKDHKPKSAK--NHHSWLWKSISNYVDKVSNLTFWDINKGTNINIWQDFWIPNY 530
+KA+YF KD AK S+ W S+ + + + T I G NI I D + ++
Sbjct: 1 MKARYF-KDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 59
Query: 531 PP-PLTNRNNSNLTTVSQLIRNNQ----WDTNTLYQCFNRDICNAILSINI-QDQQDDIA 584
PP PL T++ L WD + + Q ++ I I + + ++ D
Sbjct: 60 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 119
Query: 585 RWSLTKSGKFTIKSMYYYLRTE-----------HYPYDMKEWEFIWHLPILPKIKLFLWK 633
W+ +G++T++S Y+ L + H D+K IW+LPI+PK+K FLW+
Sbjct: 120 IWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKT--RIWNLPIMPKLKHFLWR 177
Query: 634 CCTNSLPVRDRIGKYIGHIY-HCEFC-QEQETMIHVFLHCDLAKVIW-----------LH 680
+ +L +R+ I C C +E E++ H C A + W L
Sbjct: 178 ALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLM 237
Query: 681 FNVISSNIGNIVDWIISWKDIEDHISSRFAIIL-----WHIWKARCDKCFES-KDPVSMM 734
N NI NI+++ ++D S F +L W IWKAR + F ++ S
Sbjct: 238 SNDFEENISNILNF------VQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKT 291
Query: 735 IIDAIKSSTNLQNTHQQIGKV-----------IGWSPPVNPFVKINVDASFIAVQDEA 781
++ A + + N Q K I W P +VK N DA F + EA
Sbjct: 292 VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEA 349